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EBI DbfetchID AK148379; SV 1; linear; mRNA; HTC; MUS; 1649 BP. XX AC AK148379; XX DT 06-SEP-2005 (Rel. 85, Created) DT 20-SEP-2008 (Rel. 97, Last updated, Version 9) XX DE Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, DE clone:G370118M19 product:weakly similar to FmHP [Fugu rubripes], full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1649 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Cells were provided by Drs. William J Pavan and Stacie Loftus and CC Denise Larson (Division of Intramural Research Genetic Disease CC Research Branch National Human Genome Reseach Institute National CC Institutes of Health (NIH) Building: 49, Room 4A82 49 Convent CC Drive MSC 4472 Bethesda,Maryland U.S.A) whose assistance we CC gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1649 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="G370118M19" FT /cell_type="B16 F10Y cells" FT /db_xref="taxon:10090" FT CDS 28..708 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="weakly similar to FmHP [Fugu rubripes] FT (UniProt|Q8AV19, evidence: FASTY, 50.6%ID, 99.5%length, FT match=684)" FT /db_xref="InterPro:IPR012336" FT /db_xref="MGI:1913379" FT /db_xref="UniProtKB/Swiss-Prot:Q9D1A0" FT /protein_id="BAE28518.1" FT /translation="MAAPVTRQVSGCAGRVPSPAGSVTERGQPLAAAVAELPVLDASGR FT RVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLREADVTLIVIGQSSYHHI FT EPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEISSSGQSPHIKSNLLSGSLQSLWRAVT FT GPLFDFQGDPAQQGGTLILGPGNNIHFVHRDRNRLDHKPINSVLQLVGVQPVNFMSRPT FT VIHV" FT polyA_signal 1630..1635 FT /note="putative" FT polyA_site 1649 FT /note="putative" XX SQ Sequence 1649 BP; 491 A; 356 C; 389 G; 413 T; 0 other; ggacctgagc ggtcgccctc ctccgcgatg gccgcgccgg tgacgcggca ggtcagcggc 60 tgcgcaggcc gggtcccgag cccggctggc tcggtcacag agcgcgggca gccgctagcg 120 gccgccgtag cggagctgcc cgtgctggac gcgtctggga gacgggtgac gttcggagcg 180 ctgttccgag agcggcgagc cgtggtggtg tttgtgaggc atttcttgtg ttacgtctgt 240 aaagaatatg tcgaagatct ggccaaaatc cccaagagcg tcctccgaga agcagatgtc 300 accctcatag tgattggaca atcatcatac catcatattg agcctttctg caaactgact 360 ggatattctc atgaaatcta tgttgatcct gagagagaaa tttacaaaag attgggaatg 420 aaaagaggtg aagaaatttc ctcctctgga cagagccccc acataaagtc caacctgctc 480 tcgggaagcc ttcagagcct gtggcgggca gtcactggcc cactttttga tttccaagga 540 gacccagctc agcaaggagg aaccctcatt ttaggtccag gtaacaacat ccactttgtg 600 caccgagaca ggaataggtt ggatcacaaa cccataaact ctgttttaca gcttgtgggg 660 gttcagcctg tgaacttcat gagcagacct acagtcatcc acgtgtgact ttacgtggca 720 tcttccactt gtgaatgggc cattaaaact gtgtttcata gggctatgaa acacagaact 780 tatgtgccta tagaactaca tgctgaggga catcagttgt cagaaatgga acaaacagtt 840 taaattttat aacttctata attttataca aaatatgtaa aagtcaaaca ttataaaact 900 atcattgtta atatcatttt atgagtatct actcaataaa agatttttgg caactaaaat 960 ataagaaggg ggcgctagaa aaatcactca gtggttaaga gcacttgctt ctcttgcaga 1020 agacccagga cccaggtttg gttcctaaaa cccacgtggt agctctcaat tgtctgtaac 1080 tccagttcca atggatccaa caccttatag cctctggtac acatgcatac atataggcaa 1140 acactcatac acataaaaaa acaaatcttt taagaaatac atatgtgtgt atagggaaga 1200 gaatcgaaga aggggccaga tatgatggca caggcttgta atcctagccc tgagaaatgg 1260 agacgagtca ggcctgagct atatagagag aacctttctg agaaaaagtc agggctggtg 1320 agatggctca gtagataaga gcactgactg ctcttccaaa ggtcctgagt tcaaatccca 1380 gcaaccacat ggtggctcgc aaccacccat aagatctgat gccctcttct ggtgcatctg 1440 aagatagcta cagtgtactt acttataata ataaataatt ttttttttaa aagaaaaagt 1500 cagttaattg cagggaggaa tacataaagg gaaagaaaag cagttcagga aagttactct 1560 gtaaacagtg tagccacaga tgtgtatgta cttggttttt ttttttgtat gcttggagaa 1620 aaaatggcaa ataaacacag aacaacttt 1649 // |
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