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EBI DbfetchID AK148125; SV 1; linear; mRNA; HTC; MUS; 2654 BP. XX AC AK148125; XX DT 06-SEP-2005 (Rel. 85, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, DE clone:G370028A02 product:GDP-mannose pyrophosphorylase B, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2654 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR Ensembl-Gn; ENSMUSG00000070284; Mus_musculus. DR Ensembl-Tr; ENSMUST00000047947; Mus_musculus. DR Ensembl-Tr; ENSMUST00000112295; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Cells were provided by Drs. William J Pavan and Stacie Loftus and CC Denise Larson (Division of Intramural Research Genetic Disease CC Research Branch National Human Genome Reseach Institute National CC Institutes of Health (NIH) Building: 49, Room 4A82 49 Convent CC Drive MSC 4472 Bethesda,Maryland U.S.A) whose assistance we CC gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..2654 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="G370028A02" FT /cell_type="B16 F10Y cells" FT /db_xref="taxon:10090" FT CDS 228..1310 FT /codon_start=1 FT /transl_table=1 FT /note="GDP-mannose pyrophosphorylase B (MGD|MGI:2660880 FT GB|NM_177910, evidence: BLASTN, 99%, match=1535)" FT /note="putative" FT /db_xref="GOA:Q8BTZ7" FT /db_xref="HSSP:1WVC" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR005835" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="MGI:2660880" FT /db_xref="UniProtKB/Swiss-Prot:Q8BTZ7" FT /protein_id="BAE28361.1" FT /translation="MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAG FT VDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPF FT FVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKP FT QVFVSNKINAGMYILSPAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQP FT KDFLTGMCLFLQSLRQKHPERLYSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVE FT DGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNG FT ASVLPHKSIGESVPEPRIIM" XX SQ Sequence 2654 BP; 577 A; 653 C; 814 G; 610 T; 0 other; gtactccgga ccagccggtc tccaaccagt tcctcgtctt ctgttctggc tgatcctgga 60 ccccacatca gagtagagca ggggggcgag gtgacaccag agttggtcag tctagttggt 120 gaaacgtgca ggtcagggca cggcgttggg agtgcgcggc aggggtcggt caggcggcct 180 gtaagtactt tggaccgata gatccacttc taacatctgc agacgccatg aaggcactga 240 tcttggtggg agggtatggg acacggttgc ggccgctgac gttgagcact ccgaagccat 300 tggtggactt ctgcaataag cccatcttgc tgcatcaagt ggaggcgctt gctgcggcag 360 gtgtggacca cgtgatcctg gcagtgagct acatgtcaca gatgttggag aaggaaatga 420 aggcacaaga gcaaaggctt ggaatccgaa tctctatgtc tcatgaagag gagcctttgg 480 ggacagctgg gcctctggcg ttggcccgag acctactatc tgagactgcc gaccctttct 540 tcgttctcaa cagtgatgtg atatgtgatt tccccttcca agccatggtg cagtttcatc 600 ggcaccatgg ccaagagggc tccatcttgg ttaccaaggt ggaagagcct tccaagtatg 660 gtgtggtggt atgtgaggct gacacaggcc gcatccaccg ttttgttgag aagccacagg 720 tgtttgtgtc caataagatc aacgcaggca tgtacatcct gagccctgct gtgctgcagc 780 gcatccagct gaagcctaca tccattgaga aggagatctt cccagttatg gccaaggagg 840 ggcagctata tgccatggag ctgcagggct tctggatgga cattggacag cccaaggatt 900 tcctcactgg catgtgcctc ttcctacaat cgctgagaca gaagcatcca gagagactgt 960 actcaggccc tggcattgtg gggaatgtac ttgtggaccc aagtgcccgt atcggtcaga 1020 actgcagcat tggccccaat gtaagcctgg gtcctggtgt ggtggtggag gatggtgtgt 1080 gcatccggcg atgcacagtg cttcgtgatg ctcacatccg ctcccattcc tggcttgagt 1140 catgcatcgt gggctggcgc tgccgtgtgg gccaatgggt gcgcatggag aatgtaacag 1200 tgctgggtga agatgtcata gttaatgatg aactgtacct caatggagcc agcgtgctgc 1260 cccacaagtc tatcggggag tcagtaccag aacctcgtat tatcatgtga aggatatgga 1320 gggctggcca agcatccact ttgccatcag cagggtagga ctcaatgctt cacgaggccc 1380 tggacttggt gccatttgtc tagggaggag tggatgactc tgaagctgtc ggacttctgc 1440 cttctggtgg ggacagacat ggacaggacc ctgctgggtg taacccacaa gcccccactc 1500 cctcaagaag agcgggccca gggctgtttg ggataataat ttaatgctca ctgtagcatg 1560 gactggaagt caagctcagg ctcccaccag cgaggctaca cacaggcaga tgggtgggtg 1620 gaagtggtaa gagtgagggt gatgggtaaa cagggcccgg tctgcggctg atggcggagc 1680 ttccaggatg gcctaggcag ctgaggacat ggcgcttgtg ttggctgcct tgtcccagtc 1740 ctctacagat acaatggtgg ctttgcagaa gaagcagtcc ttgttgttca tcaggtgctg 1800 gttgatgcag gctctacaag aggggaggga aggagtgcta cctcgtgcgt cctaatttgc 1860 ctccccaagt ccatggggcc cacttacttg caggatttgt ggccacaagg ctggaacaca 1920 gcagagatgg gatgggcgta gcagattggg cagaggtcct cttcattggt gggctacagg 1980 gcagagtgga ggagttgggc tgggatcctt acccctgtcc tggtgtttac agattagtaa 2040 aacggcctct gttatgccac actcaccagg gaggcggcgg ccgcctgggc agatgcagcg 2100 gtcaggtgag ccagcatctg ttccacctgg gccagctcct cagcgctgat ataatctgta 2160 tctgcatcag tagtaggtag catcagggcc cctgtcgtct gagaactcag cgcctcttga 2220 atactcccag gcagggaatt tgctattgag gatcctgaaa ctcttccctg acctgaccca 2280 cccgctggtt cacttacaac tctgtagaga gaagcgtttc cggtcagggg caggcaaggt 2340 agtgccaggt gctaggggct ctggctgccc caggagatag catatggaac gaagctggaa 2400 gcagggatca gccaggagca cagaggtggc ttgctctgtc ctaggtaggg gagggtgcat 2460 aggtcgtagg aaggctttga gcctgtgtga acattttctc cacgtgggac agatgaatat 2520 ccagaggcct cgctcattat tatgcctcca ctctcccccc tattacttac caaccctccc 2580 aggtgtttgg tcccacatga cctgaatacc agtttaaaga gaagggtgct attgataaaa 2640 aggtgcttgc tacc 2654 // |
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