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EBI DbfetchID AK142685; SV 1; linear; mRNA; HTC; MUS; 2400 BP. XX AC AK142685; XX DT 06-SEP-2005 (Rel. 85, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN DE full-length enriched library, clone:D730049I06 product:similar to DE threonyl-tRNA synthetase (Hypothetical protein) [Homo sapiens], full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2400 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000158855. DR Ensembl-Gn; ENSMUSG00000028107; Mus_musculus. DR Ensembl-Tr; ENSMUST00000029752; Mus_musculus. DR Ensembl-Tr; ENSMUST00000074339; Mus_musculus. DR Ensembl-Tr; ENSMUST00000098857; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..2400 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="female" FT /dev_stage="10 days lactation, adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="D730049I06" FT /tissue_type="mammary gland" FT /db_xref="taxon:10090" FT CDS 35..2206 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="similar to threonyl-tRNA synthetase (Hypothetical FT protein) [Homo sapiens] (UniProt|Q9BW92, evidence: FASTY, FT 83.7%ID, 100%length, match=2169)" FT /db_xref="GOA:Q3UQ84" FT /db_xref="HSSP:1WWT" FT /db_xref="InterPro:IPR002314" FT /db_xref="InterPro:IPR002320" FT /db_xref="InterPro:IPR004095" FT /db_xref="InterPro:IPR004154" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR012675" FT /db_xref="InterPro:IPR012676" FT /db_xref="InterPro:IPR012947" FT /db_xref="InterPro:IPR018158" FT /db_xref="InterPro:IPR018163" FT /db_xref="MGI:1919057" FT /db_xref="UniProtKB/Swiss-Prot:Q3UQ84" FT /protein_id="BAE25159.1" FT /translation="MGLCLRWRRLGFPLPEFRRCELHTVREASAPTPPHWLAERFGLFE FT ELWTAHVKKLASMTQKKARAIKISLPEGQKVDAVAWNTTPYQLAHQISVTLADTAVAAE FT VNGELYDLDRPLETDCHLRFLTFDSPEGKAVFWHSSAHVLGAAAEQQLGAVLCRGPSTE FT SGFYHDFFLGKERTVRSAELPILERICQELIAAAQPFRRLEASRDQLRQLFKDNHFKLH FT LIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIGALKLLTNSSALWRSLGAPETLQRV FT SGISFPKVELLRNWEARREAAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRVYNAL FT VAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHP FT ARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWR FT FQQDDAHIFCAPHQLEAEIQGCLDFLRCVYSVLGFSFHLALSTRPPGFLGEPRLWDQAE FT QVLQQALEKFGEPWDLNPGDGAFYGPKIDVHLHDALGRPHQCGTIQLDFQLPLRFDLQY FT KGPAGTPECPVLIHRAVLGSVERLLGVLAESCGGKWPLWLSPLQVVVIPVRTEQEEYAR FT QVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTVNVRTRDNR FT QLGERDLAESVQRLLELQNARVPNAEEVF" FT polyA_signal 2380..2385 FT /note="putative" FT polyA_site 2400 FT /note="putative" XX SQ Sequence 2400 BP; 544 A; 633 C; 689 G; 534 T; 0 other; ggatcggagc atggaggtac cgatttgaga cagcatgggt ctctgtctga ggtggcgccg 60 gcttgggttc ccactcccag agttccgccg ctgcgagctc cacaccgtgc gtgaggcctc 120 tgcaccaact cctccacatt ggttggcaga acgatttggc ctttttgagg agctatggac 180 cgctcacgtg aaaaagttag caagtatgac acagaagaaa gcccgggcta ttaagatatc 240 acttcctgaa ggccagaagg tagatgctgt tgcatggaac acaacccctt accaactggc 300 ccatcagatc agtgtaacac tggctgatac tgcagtggct gctgaagtaa atggagaact 360 ttacgatctg gaccgaccct tggagacaga ttgtcacctc agatttctga catttgattc 420 cccagagggc aaagcggtgt tctggcactc tagtgcccat gttctggggg ctgcggctga 480 gcaacaactg ggtgctgttc tctgccgagg tccaagcaca gaatcgggct tttaccatga 540 cttcttcctg ggaaaagaac ggacagtccg cagcgcagag ttgcccattt tagagcggat 600 ttgccaggag ctcatagctg ctgcacagcc tttccggagg ctggaggctt cacgggatca 660 gcttcgccag ctcttcaagg acaaccactt taagcttcat ctgatcgagg agaaagtgac 720 aggcccaacg gcaacagtgt atgggtgtgg catgtcagtt gacctgtgcc gaggccccca 780 tcttcggcac actggacaga ttggagcact gaagctgctc acgaactcct cagccttgtg 840 gaggtccttg ggagcacctg agacactgca gagggtatca ggaatttctt tccccaaagt 900 agagttactg aggaactggg aagctcgaag agaagcagca gagttaagag accacagacg 960 cattgggaag gaacaggagc tcttcttctt ccatgaactg agccctggga gctgtttttt 1020 cttgccacga gggacaagag tctataatgc cctggtggct ttcatcaggg ctgagtatgc 1080 ccgccgtggt ttctcagagg tgaaaactcc cacgctgttt tctacaaaac tctgggaaca 1140 gtcagggcac tgggaacact atagggcaga catgttttcc ctgaagcccc ctggcactga 1200 tggtgttgac aactcccaga gtggccatcc tgccaggtgt cccaaagaca cacttgctct 1260 aaagcccatg aactgccctg cacactgcct gatgtttgcc caccggccca gatcctggag 1320 ggaactgcct gtgcgactgg ctgatttcgg agccctgcat cgggctgagg cctctggcag 1380 tctgggagga ttaacgcggc tgtggcgctt ccagcaggat gatgcgcaca tcttttgtgc 1440 accccatcag ctggaagcag agatccaggg ctgccttgat tttctccggt gtgtttactc 1500 ggttcttggt ttttccttcc acctggcttt atctacccgg ccacctggtt tcctagggga 1560 gcctcgccta tgggaccagg ctgagcaggt tctacagcaa gccttggaga agtttggaga 1620 accttgggac ctcaaccctg gagatggggc tttctatggg cctaagattg atgtgcacct 1680 ccacgacgcc cttggtcggc cccatcagtg tggaacaatc cagcttgact tccagctgcc 1740 actgagattt gacctacaat acaaggggcc ggcaggtacc ccagagtgtc cagtccttat 1800 tcatcgagca gtgcttggtt ctgtggaaag gctgttggga gtgctggcag aaagctgtgg 1860 ggggaaatgg cccctgtggc tgtccccgct ccaggtggtg gtcatccctg tgaggacaga 1920 gcaagaggaa tatgccaggc aggtgcaaca gtgcctgcag gctgcaggac ttgtgagtga 1980 tctcgatgca gactctggac tgaccctcag ccggagagtc cgccgggccc agcttgccca 2040 ctacaacttt cagtttgtgg ttggccagag agagcagagt caaaggacag tgaacgtacg 2100 cacgcgagat aaccggcagc tcggggagcg agacctggcc gagtccgtgc agagactgct 2160 ggagttacag aacgccaggg tccccaatgc agaagaagtg ttctgagtca tgtccattgg 2220 tgatgtacag actcatgaga gccgtccgtc cctttccacg ggacagtaac ccagctggca 2280 gccccgcatg tccccgaggc ctcagaactg ctctctgaaa atagacatgg tgtggggctc 2340 cccacagaaa ggaatgctgt actgactgga tagaaggaga ataaaaatat acttgaagcc 2400 // |
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