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EBI DbfetchID AK132524; SV 1; linear; mRNA; HTC; MUS; 2327 BP. XX AC AK132524; XX DT 06-SEP-2005 (Rel. 85, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, DE clone:4732493A10 product:AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate DE deaminase) (AMP deaminase isoform M) homolog [Rattus norvegicus], full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2327 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000160768. DR Ensembl-Gn; ENSMUSG00000070385; Mus_musculus. DR Ensembl-Tr; ENSMUST00000090715; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..2327 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="10 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="4732493A10" FT /tissue_type="skin" FT /db_xref="taxon:10090" FT CDS 74..2311 FT /codon_start=1 FT /transl_table=1 FT /note="AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate FT deaminase) (AMP deaminase isoform M) homolog [Rattus FT norvegicus] (UniProt|P10759, evidence: FASTY, 97.3%ID, FT 100%length, match=2235)" FT /note="putative" FT /db_xref="GOA:Q3V1D3" FT /db_xref="InterPro:IPR016297" FT /db_xref="MGI:88015" FT /db_xref="UniProtKB/Swiss-Prot:Q3V1D3" FT /protein_id="BAE21218.1" FT /translation="MPLFKLTGQGKQIDDAMRSFAEKVFASEVKDEGGRHEISPFDVDE FT ICPISLHEMQAHIFHMENLSMDGRRKRRFQGRKTVNLSIPQSETSSTKLSHIEEFISSS FT PTYESVPDFQRVQITGDYASGVTVEDFEVVCKGLYRALCIREKYMQKSFQRFPKTPSKY FT LRNIDGEALVGNESFYPVFTPPPKKGEDPFRTEDLPANLGYHLKMKAGVIYIYPDEAAA FT NRDDPKPYPYPNLDDFLDDMNFLLALIAQGPVKTYAHRRLKFLSSKFQVHQMLNEMDEL FT KELKNNPHRDFYNCRKVDTHIHAAACMNQKHLLRFIKKSYHIDADRVVYSTKEKSLTLK FT ELFAKLNMHPYDLTVDSLDVHAGRQTFQRFDKFNDKYNPVGASELRDLYLKTDNYINGE FT YFATIIKEVGADLVEAKYQHAEPRLSIYGRSPDEWNKLSSWFVCNRIYCPNMTWMIQVP FT RIYDVFRSKNFLPHFGKMLENIFLPVFEATINPQAHPDLSVFLKHITGFDSVDDESKHS FT GHMFSSKSPKPEEWTMGNNPSYTYYAYYMYANITVLNSLRKERGMNTFLFRPHCGEAGA FT LTHLMTAFMIADNISHGLNLKKSPVLQYLFFLAQIPIAMSPLSNNSLFLEYAKNPFLDF FT LQKGLMISLSTDDPMQFHFTKEPLMEEYAIAAQVFKLSTCDMCEVARNSVLQCGISHEE FT KAKFLGNNYLEEGPVGNDIRRTNVAQIRMAYRYETWCYELNLIAEGLKATE" XX SQ Sequence 2327 BP; 635 A; 591 C; 527 G; 574 T; 0 other; ggtcattccg ccatccccac agtctctctc cttcctctgc tgtgctatcc tagaatcaag 60 gatcccagcc acaatgcctc tattcaaact aacaggtcaa ggaaaacaaa ttgatgatgc 120 aatgcgtagc tttgctgaaa aagtgtttgc ctctgaagtc aaagatgagg gaggtcggca 180 cgagatctcc cccttcgacg tggatgagat ctgcccaatt tcccttcatg agatgcaggc 240 ccacatattc cacatggaga acctgtccat ggatggcagg agaaaaaggc gtttccaagg 300 acggaagact gttaatttgt ccattccaca aagtgaaaca tcttctacca aactgtccca 360 catcgaagaa tttatttctt catccccaac ctacgagagt gtgcctgact tccagagggt 420 gcagatcact ggagactatg cctcgggggt aaccgttgaa gactttgagg tggtttgtaa 480 aggtctctat cgggcattgt gtatacgaga gaaatacatg cagaagtcat tccagaggtt 540 ccccaagacc ccctccaagt acttgaggaa cattgatggc gaagccttgg taggaaacga 600 gagcttctac ccagtattta cccctcctcc gaagaagggt gaagacccct ttcgcacaga 660 ggaccttcct gcaaacctgg gctatcacct caagatgaaa gctggtgtga tttacatcta 720 ccctgatgaa gcggcagcca acagagatga ccccaagccc tacccttacc caaatctgga 780 tgacttcctg gatgacatga attttttgct tgctctaatt gcacaagggc ctgttaagac 840 ttatgctcac cgccgcctga agttcctctc ctccaagttc caggtccatc agatgctcaa 900 cgagatggat gagctgaagg agctgaagaa caacccccac cgggactttt ataactgcag 960 gaaggtggat actcacatcc atgcagctgc ctgcatgaac cagaagcacc tgctgcgctt 1020 cattaagaaa tcttaccata ttgacgccga cagggtggtc tacagcacta aagagaagag 1080 cctgactctg aaggaacttt tcgctaagtt gaatatgcat ccctatgacc tgactgttga 1140 ctctctggat gttcatgctg gacgccagac gttccaacgt tttgataagt tcaatgacaa 1200 atacaatccc gtgggtgcaa gtgagcttcg ggacctctac ctaaaaacag acaactacat 1260 taatggggag tattttgcca ctatcatcaa ggaggtgggt gcagacctgg tggaggccaa 1320 gtatcagcat gcagagcctc gcttatccat ctacggtcgc agtccagatg agtggaacaa 1380 actctcctct tggtttgtct gcaatcgcat ctattgcccc aacatgacgt ggatgatcca 1440 ggtccccagg atctatgatg tgttccgatc caagaatttc ctgccacact tcggaaagat 1500 gctggagaat attttccttc cagtgtttga ggccaccatc aacccccaag ctcacccaga 1560 cctcagtgtc ttcctcaagc acatcactgg ctttgacagt gtggatgatg aatccaaaca 1620 cagtggtcac atgttttcct ccaagagtcc caaacccgag gagtggacaa tgggaaacaa 1680 cccgtcttat acttactatg cctactacat gtatgcaaac atcacggtgc tcaacagcct 1740 gagaaaggaa cgaggcatga atacatttct gtttcgtccc cactgtgggg aggctggggc 1800 tctcactcac ctcatgacag ccttcatgat agcagacaat atttctcatg gactgaattt 1860 aaagaagagt cctgtgctac agtacttgtt tttcctagcc cagattccca tcgccatgtc 1920 accgctgagt aacaacagtc tgttcctcga atatgcaaag aatcctttct tagatttcct 1980 ccagaaaggc ctgatgatct cactgtcgac cgatgacccg atgcagttcc acttcaccaa 2040 ggagcccctg atggaagaat acgccatcgc tgcgcaagtc ttcaagctga gcacgtgtga 2100 catgtgtgag gtggcaagga acagtgtcct gcagtgtggg atttctcatg aggaaaaagc 2160 aaagtttctg ggcaacaatt accttgagga aggccctgtt ggaaatgaca tccggaggac 2220 aaatgtcgct cagattcgca tggcctatcg ttatgaaact tggtgttatg aactcaattt 2280 aattgctgag ggtcttaaag caacagaatg aataaagtaa atagact 2327 // |
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