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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK118596; SV 1; linear; mRNA; STD; PLN; 980 BP.
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AC   AK118596;
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DT   13-DEC-2002 (Rel. 74, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 3)
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DE   Arabidopsis thaliana At2g43580 mRNA for putative endochitinase, complete
DE   cds, clone: RAFL19-84-G19.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-980
RA   Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M.,
RA   Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   ;
RL   Submitted (25-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Genomic Sciences Center; 1-7-22 Suehiro-cho,
RL   Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
RL   (E-mail:mseki@gsc.riken.go.jp, URL:http://pfgweb.gsc.riken.go.jp,
RL   Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M.,
RA   Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Arabidopsis thaliana full-length cDNA";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed
CC   essentially as reported previously (Seki et al. (1998) Plant
CC   J. 15:707-720; Seki et al. (2002) Science 296:141-145).
CC   cDNA cleaved with BamHI and XhoI was ligated to modified
CC   Lambda FLC-1-E vector (Carninci et al. (2001) Genomics
CC   77:79-90) digested with BamHI and SalI.
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://pfgweb.gsc.riken.go.jp/)
CC   for further details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..980
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL19-84-G19"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             16..813
FT                   /codon_start=1
FT                   /gene="At2g43580"
FT                   /product="putative endochitinase"
FT                   /db_xref="GOA:O24598"
FT                   /db_xref="HSSP:1Q9B"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:O24598"
FT                   /protein_id="BAC43195.1"
FT                   /translation="MALTKIFLILLLSLLGLYSETVKSQNCDCAPNLCCSQFGYCGTTA
FT                   DYCGSTCQSGPCRVGGPPTGAGLVGNIVTQIFFNNIINQAGNGCAGKSFYTRDSFINAT
FT                   NTFPSFANTVTRREIATMFAHFTYETGHFCYIEEINGASRVMCDQNNRQYPCAPAKSYH
FT                   GRGPLLLSWNFNYGACGQSLGLDLLRQPELVSSNPVVAFRTALWFWMKSVRPVLNQGFG
FT                   ATIRAISGFDCDGRNLGGVNARIGYYRDYCGQLGLDPGANITC"
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SQ   Sequence 980 BP; 270 A; 218 C; 223 G; 269 T; 0 other;
     aacaagaacc caaagatggc tctcacaaaa atcttcttaa tccttctcct atccctctta        60
     ggtttatatt ctgaaaccgt caaatctcaa aactgcgatt gcgcccctaa cctatgttgc       120
     agtcagttcg gttattgcgg taccactgca gattactgtg gttctacgtg ccaatcaggt       180
     ccttgtagag tcggtggacc ccctaccggt gccggtttgg ttggtaatat cgtgacacaa       240
     attttcttta acaacattat caaccaagcc ggtaatggat gcgcgggaaa aagtttttac       300
     acccgggact ctttcattaa cgccaccaat actttcccca gctttgctaa taccgttact       360
     agacgtgaaa ttgctaccat gtttgctcat ttcacttacg agacaggaca cttctgctac       420
     atagaagaga taaacggggc gtcacgtgtc atgtgcgacc agaacaacag gcaatatcca       480
     tgtgcaccgg ccaagagcta ccatggccgt ggtccgctcc tactatcatg gaacttcaac       540
     tatggagcat gcggccagag tctcggctta gacctcctac gccagcccga gctggtgagt       600
     agtaacccag tcgtggcttt caggacggct ctgtggtttt ggatgaagag cgtgaggcct       660
     gtattgaacc agggatttgg agccaccata agagccatca gcggtttcga ctgtgacggt       720
     aggaacttag gtggggtgaa cgcaaggatt ggctactata gagactattg tgggcagctt       780
     ggtttggacc ctggcgccaa cataacttgc taaaacgctc ttgggacata catggcacga       840
     aagtattaaa ggtgaaataa gaagtgttgt tgtaattgta gtactttttt tttttttttt       900
     ttgataaaaa gctagagtaa tcttgtgaag tgaaatcaca ttattaaaag attaataaat       960
     cgacttatac aaaaaaaaag                                                   980
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