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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK117396; SV 1; linear; mRNA; STD; PLN; 1348 BP.
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AC   AK117396;
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DT   13-DEC-2002 (Rel. 74, Created)
DT   14-FEB-2004 (Rel. 78, Last updated, Version 2)
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DE   Arabidopsis thaliana At1g56550 mRNA for unknown protein, complete cds,
DE   clone: RAFL16-98-C24.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1348
RA   Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M.,
RA   Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   ;
RL   Submitted (25-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Genomic Sciences Center; 1-7-22 Suehiro-cho,
RL   Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
RL   (E-mail:mseki@gsc.riken.go.jp, URL:http://pfgweb.gsc.riken.go.jp,
RL   Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M.,
RA   Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Arabidopsis thaliana full-length cDNA";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed
CC   essentially as reported previously (Seki et al. (1998) Plant
CC   J. 15:707-720; Seki et al. (2002) Science 296:141-145).
CC   cDNA cleaved with BamHI and XhoI was ligated to modified
CC   Lambda FLC-1-E vector (Carninci et al. (2001) Genomics
CC   77:79-90) digested with BamHI and SalI.
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://pfgweb.gsc.riken.go.jp/)
CC   for further details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1348
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL16-98-C24"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             36..1187
FT                   /codon_start=1
FT                   /gene="At1g56550/F25P12_20"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9FXA7"
FT                   /db_xref="InterPro:IPR003388"
FT                   /db_xref="UniProtKB/TrEMBL:Q9FXA7"
FT                   /protein_id="BAC42064.1"
FT                   /translation="MAQQSQRPISNRHISLLNRNGLILLLLLALFVILGVFLPLTKSSL
FT                   FMFPNTTSSSLSPSSSLSVSDWRDYSLAQAVKFVAKNETVIVCAVSYPFLPFLNNWLIS
FT                   ISRQKHQEKVLVIAEDYATLYKVNEKWPGHAVLIPPALDPQSAHKFGSQGFFNLTSRRP
FT                   QHLLNILELGYNVMYNDVDMVWLQDPFDYLQGSYDAYFMDDMIAIKPLNHSHDLPPLSR
FT                   SGVTYVCSCMIFLRSTDGGKLLMKTWVEEIQAQPWNNTQAKKPHDQPAFNRALHKTANQ
FT                   VKVYLLPQSAFPSGGLYFRNETWVNETRGKHVIVHNNYIIGYDKKMKRFQDFSLWLVDD
FT                   HALESPLGKLEIYQEQNTTTEGKNLTKIVRKQRKNRGKKHKLP"
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SQ   Sequence 1348 BP; 392 A; 303 C; 246 G; 407 T; 0 other;
     aacttgtgaa aacctttctt tccaaatttg tttccatggc gcagcagagc caacgtccaa        60
     tctcaaaccg tcacatctct ctcctcaacc gtaacggtct catcctcctt ctccttctag       120
     ctctctttgt tatcctcggt gtattcttac ctttgacaaa atcttccttg ttcatgtttc       180
     caaacacaac atcttcttct ctttctcctt cttcttcttt atcggtctcc gactggcgcg       240
     actattccct tgctcaagcc gttaagtttg ttgctaagaa cgagactgtg atcgtctgtg       300
     ctgttagcta ccctttcttg ccttttctta acaactggtt gattagcatt tctagacaga       360
     aacatcaaga aaaagttctt gtgatcgctg aagactatgc tactttgtac aaagtcaacg       420
     aaaagtggcc tggtcatgct gttctcattc ctccggcgtt ggatcctcaa tccgcacaca       480
     aatttggttc ccagggtttc ttcaatctga catctcggag gccacaacat ctcttaaaca       540
     ttttggagct aggttacaat gttatgtaca atgatgttga tatggtctgg ctacaagatc       600
     catttgacta tttacaagga agctacgatg catacttcat ggatgacatg attgcgatta       660
     agcctttgaa tcactcccat gatttaccac ctctaagtcg aagcggagtt acttatgtat       720
     gtagctgcat gattttcttg cgttccactg atggcggaaa gcttctaatg aagacatggg       780
     tcgaggaaat tcaagctcaa ccttggaata acactcaagc aaagaaacca catgatcagc       840
     ctgcttttaa tcgggcactt cacaaaacag ctaatcaagt aaaagtctac ttgcttccgc       900
     aatcagcttt cccatcagga ggattgtact tcaggaatga gacatgggtt aacgagacaa       960
     gggggaaaca tgtcatagtc cacaataact acattatcgg ttacgacaag aagatgaaac      1020
     gttttcaaga ctttagtcta tggctagtcg atgatcatgc tcttgagtcc ccactcggaa      1080
     aactagagat atatcaagag cagaatacta ctactgaagg gaaaaatctg acgaaaatag      1140
     tgagaaaaca gaggaaaaac aggggtaaaa aacacaagtt accctagaga ggacttctcc      1200
     ttacgtacga caagtgtagg atctcgaaat tgttgcgcgg agatttattc aaactcgatt      1260
     acttagatat atgttcaaag tctcccatta taatatgata tttatacata aatactcatc      1320
     agcactattt cattaataac ttttatgt                                         1348
//
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