EBI Dbfetch

ID   AK117349; SV 1; linear; mRNA; STD; PLN; 2516 BP.
XX
AC   AK117349;
XX
DT   13-DEC-2002 (Rel. 74, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Arabidopsis thaliana At4g08160 mRNA for putative xylan endohydrolase,
DE   complete cds, clone: RAFL16-91-G20.
XX
KW   CAP trapper; FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2516
RA   Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M.,
RA   Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   ;
RL   Submitted (25-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Genomic Sciences Center; 1-7-22 Suehiro-cho,
RL   Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
RL   (E-mail:mseki@gsc.riken.go.jp, URL:http://pfgweb.gsc.riken.go.jp,
RL   Tel:81-45-503-9625, Fax:81-45-503-9586)
XX
RN   [2]
RA   Seki M., Iida K., Satou M., Sakurai T., Akiyama K., Ishida J., Nakajima M.,
RA   Enju A., Kamiya A., Narusaka M., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Arabidopsis thaliana full-length cDNA";
RL   Unpublished.
XX
CC   An Arabidopsis full-length cDNA library was constructed
CC   essentially as reported previously (Seki et al. (1998) Plant
CC   J. 15:707-720; Seki et al. (2002) Science 296:141-145).
CC   cDNA cleaved with BamHI and XhoI was ligated to modified
CC   Lambda FLC-1-E vector (Carninci et al. (2001) Genomics
CC   77:79-90) digested with BamHI and SalI.
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://pfgweb.gsc.riken.go.jp/)
CC   for further details.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2516
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL16-91-G20"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             81..2339
FT                   /codon_start=1
FT                   /gene="At4g08160/F9M13_1"
FT                   /product="putative xylan endohydrolase"
FT                   /db_xref="GOA:Q8GYW5"
FT                   /db_xref="HSSP:1I1W"
FT                   /db_xref="InterPro:IPR001000"
FT                   /db_xref="InterPro:IPR003305"
FT                   /db_xref="InterPro:IPR008979"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="UniProtKB/TrEMBL:Q8GYW5"
FT                   /protein_id="BAC42019.1"
FT                   /translation="MEKNTNTNHTSDDNNDKNHTNEEQEKIILNPNFEDGLNNWTGRAC
FT                   KIVLHESMNSGKIVPLSGKVFAAATQRKDTWNGIQQEISGRFRRKRVYEVTAVVRIFGN
FT                   NVTSATVQATLWVLNANKREQYIVIANVQATDKNWVELKGKFVIHGSPSRVILYLEGPP
FT                   PRADILLNSLVVQHAKRNRPSPPPFYENPGFGVNIVENSEVLDGGTKPWFTLGNCKLSV
FT                   GQGAPRTLPPMARDTLGPHKPLGGNYIVVTNRTQTWMGPAQMITDKIKLFLTYQISAWV
FT                   KLGVGVSGSSMSPQNVNIALSVDNQWVNGGQVEVTVGDTWHEIAGSFRLEKQPQNVMVY
FT                   VQGPGAGIDLMIAALQIFPVDRRERVRCLKRQVDEVRKRDIVLKFSGLNDDESFDLFPY
FT                   IVKVKQTYNSFPVGTCVNRTDIDNEDFVDFFTKNFNWAVFGNELKWYATEAERGKVNYQ
FT                   DADDMLDLCIGNNINVRGHCIFWEVESTVQPWVRQLNKTDLMNAVQKRLTDLLTRYKGK
FT                   FKHYDVNNEMLHGSFYQDRLGKGVRALMFNIAHKLDPSPLLFVNDYHVEDGDDPRSSPE
FT                   KYIKLVLDLEAQGATVGGIGIQGHIDSPVGAIVCSALDMLSVLGRPIWFTELDVSSSNE
FT                   YVRGEDLEVMLWEAFAHPSVEGIMLWGFWELSMSRENANLVEGEGEVNEAGKRFLEVKQ
FT                   EWLSHAYGIINDESEFTFRGYHGTYAVEICTPVGIVLKTFVVEKGDTPLVISIDLSSL"
XX
SQ   Sequence 2516 BP; 761 A; 461 C; 593 G; 701 T; 0 other;
     aaaaaaacta aaacctcaaa agctttttaa caattatctt ctttttgtgt gtacttaatc        60
     ttcttcgctt ggaacttgct atggagaaga atacaaatac gaaccataca agtgatgata       120
     ataatgataa gaatcacact aacgaagagc aggagaagat catcttaaac cctaattttg       180
     aggatggcct aaacaactgg actggaagag cgtgcaagat tgtcttacac gaatccatga       240
     acagtgggaa gatcgtaccg ctctcgggaa aagttttcgc agcagcaacg cagcgtaaag       300
     acacatggaa tgggattcaa caagagattt caggaagatt caggaggaag cgtgtgtatg       360
     aagtaacagc ggtagttcga atatttggca acaatgtcac aagtgcaaca gtacaagcga       420
     ctctctgggt cttaaacgca aacaaacgtg aacaatacat agtcattgcc aatgttcaag       480
     caacagataa gaactgggtg gagttgaagg gtaaatttgt aatccatggt tcgccatcga       540
     gagtaatact ataccttgaa ggtccacctc cacgagctga cattcttctc aacagtttag       600
     ttgttcaaca tgctaaaagg aatcgtccat cgcctcctcc tttctacgag aatcctggtt       660
     tcggagtcaa tatagtcgaa aacagtgaag ttttagatgg gggaactaaa ccatggttca       720
     ctctagggaa ctgcaagttg agtgttggac aaggcgctcc gcgcactctg cctccaatgg       780
     cgagagacac gctaggtcct cacaaacctc taggtggaaa ctacatcgtt gtgactaaca       840
     gaacgcagac ttggatgggt cctgctcaga tgataaccga taaaatcaaa ctcttcttga       900
     catatcaaat ctcagcttgg gtcaagcttg gtgtgggagt aagtggtagt agtatgagtc       960
     ctcagaatgt gaacattgca cttagcgtcg ataaccaatg ggtcaacgga ggacaagtcg      1020
     aggtcacagt tggtgataca tggcatgaaa tagccggatc ttttaggcta gagaaacagc      1080
     cacaaaacgt tatggtttac gttcaaggtc ctggagctgg cattgatttg atgatcgcgg      1140
     ctctgcagat tttccccgtg gatcgtcgag aacgtgtcag atgtctcaaa agacaagttg      1200
     atgaggtacg taagcgcgac atcgtgttga aattctcagg actaaacgac gacgaatcct      1260
     ttgatttgtt tccttacata gtgaaagtga aacaaacata caacagtttc ccagtaggaa      1320
     catgcgtcaa cagaacagac atagacaatg aagactttgt agatttcttc acaaagaact      1380
     ttaactgggc agtgttcgga aacgagctca aatggtacgc gacagaagcg gaacgtggaa      1440
     aggtaaatta ccaagacgca gacgacatgt tagatctctg cattggcaac aacataaacg      1500
     ttagaggaca ttgtatcttc tgggaagttg aatccacagt tcagccatgg gttcgccagc      1560
     ttaacaaaac cgatcttatg aacgcggtac aaaagcgtct cacggatctt ttgacgcggt      1620
     acaaaggtaa attcaagcac tatgatgtca acaacgagat gcttcatggt tctttctatc      1680
     aagatagact tggaaaaggt gtaagagcac tcatgttcaa tattgcacat aagcttgatc      1740
     catctccttt gcttttcgtt aacgattatc atgttgagga cggggatgac ccgcgttcgt      1800
     ctcccgagaa gtatataaaa cttgtacttg atttggaagc tcaaggagca actgtaggag      1860
     ggattgggat ccaaggacat atagatagtc ctgttggagc tattgtttgt tctgctcttg      1920
     atatgctctc tgttcttggt cgtcccattt ggttcacaga gcttgatgtc tcttcgagta      1980
     atgaatatgt taggggagag gatcttgaag ttatgttgtg ggaagcattt gctcaccctt      2040
     cagttgaagg aataatgtta tgggggttct gggagctatc tatgagtaga gagaacgcga      2100
     atctggtgga gggagaagga gaagtaaacg aagccggaaa aagattttta gaggtgaaac      2160
     aagaatggtt atctcatgca tatgggatca tcaatgatga gtcagagttc acattcagag      2220
     gctaccatgg gacttatgcc gtcgaaattt gtactccagt tgggattgtt ctcaaaacgt      2280
     tcgttgtcga aaaaggagac actccacttg ttatctccat tgatctctct tctttgtgat      2340
     gtttgtgtat cctttccttt ttcatttaat atttgggtgg tgatttgttt tttgtggagc      2400
     atgtaacata tgtacacaaa gttatgttat gtctttgttt ttgattgttt aatacaattg      2460
     caataaaaac ttgtgaatat gattgttaat tgttataaaa aaaaattgtt tggtgt          2516
//