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EBI DbfetchID AK110842; SV 1; linear; mRNA; STD; PLN; 1540 BP. XX AC AK110842; XX DT 19-JUL-2003 (Rel. 76, Created) DT 14-DEC-2008 (Rel. 98, Last updated, Version 4) XX DE Oryza sativa Japonica Group cDNA clone:002-172-B07, full insert sequence. XX KW FLI_CDNA; oligo capping. XX OS Oryza sativa Japonica Group OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; OC Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1540 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K., RA Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I., RA Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y., RA Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N., RA Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N., RA Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H., RA Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M., RA Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K., RA Murakami K., Murata M., Nagata T., Nakamura M., Namiki T., Narikawa R., RA Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M., RA Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H., RA Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K., RA Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S., RA Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A., RA Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y., RA Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A., RA Yazaki J., Yokomizo S., Yoshimura A.; RT ; RL Submitted (27-AUG-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, RL Department of Molecular Genetics, Head of Laboratory of Gene Expression; RL 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan XX RN [2] RA Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., RA Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., RA Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K., Shishiki T., Otomo Y., RA Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., RA Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., RA Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., RA Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., RA Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., RA Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., RA Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., RA Yoshino M., Hayashizaki Y.; RT "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from RT japonica Rice"; RL Science 301:376-379(2003). XX CC This clone is one of the 28K full-length cDNA clones from japonica CC rice. CC URL : http://cdna01.dna.affrc.go.jp/cDNA/ CC NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., CC Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., CC Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., CC Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. CC and Yamamoto,M. CC FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., CC Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., CC Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., CC Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., CC Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., CC Yoshimura,A., Matsubara,K. and Murakami,K. CC Genome Exploration Research Group in Riken Genomic Sciences Center CC and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., CC Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., CC Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., CC Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., CC Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., CC Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., CC Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., CC Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., CC Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., CC Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., CC Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., CC Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., CC Yasunishi,A. and Hayashizaki,Y. XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Oryza sativa Japonica Group" FT /cultivar="Nipponbare" FT /mol_type="mRNA" FT /clone="002-172-B07" FT /db_xref="taxon:39947" FT CDS 51..1442 FT /note="(RAP Annotation release2) Similar to Xyloglucan FT 6-xylosyltransferase (EC 2.4.2.39) (AtXT1)" FT /note="(Rice Genome Annotation Project) glycosyltransferase FT 3, putative, expressed" FT /note="mapping to R12-TIGRv4S1-000144R (Chr.12: short FT arm=2432327, long arm=2433867, direction=reverse) for TIGR FT Pseudomol ver4" FT /db_xref="GOA:Q2QXP0" FT /db_xref="InterPro:IPR008630" FT /db_xref="UniProtKB/TrEMBL:Q2QXP0" FT /protein_id="BAG99053.1" FT /translation="MAVTGGGRPAVRQQAARGKQMQRTFNNVKITLICGFITLLVLRGT FT VGINLLTYGVGGGGGSDAVAAAEEARVVEDIERILREIRSDTDDDDDDEEEEPLGVDAS FT TTTTTNSTTTTATAARRRSSNHTYTLGPKVTRWNAKRRQWLSRNPGFPSRDARGKPRIL FT LVTGSQPAPCDDAAGDHYLLKATKNKIDYCRIHGIEIVHSMAHLDRELAGYWAKLPLLR FT RLMLSHPEVEWVWWMDSDALFTDMAFELPLARYDTSNLVIHGYPELLFAKRSWIALNTG FT SFLLRNCQWSLELLDAWAPMGPKGRVRDEAGKVLTASLTGRPAFEADDQSALIHILLTQ FT KERWMEKVYVEDKYFLHGFWAGLVDKYEEMMERHHPGLGDERWPFVTHFVGCKPCGGYG FT DYPRERCLGGMERAFNFADNQVLRLYGFRHRSLASARVRRVANRTDNPLVNKEAALKMD FT AKIES" XX SQ Sequence 1540 BP; 302 A; 488 C; 511 G; 239 T; 0 other; agacgctcgc cgatcgatcg agcagcggag gagcacagta gtgtgtagct atggcggtga 60 ccggcggcgg gaggccggcg gtgaggcagc aggcggcgag ggggaagcag atgcagagga 120 cgttcaacaa cgtcaagatc acgctcatct gcggcttcat cacgctcctc gtcctccgtg 180 gcaccgtcgg catcaacctc ctcacctacg gcgtcggcgg cggcggcggc tccgacgccg 240 tggcggccgc cgaggaggcc agggtcgtcg aggacatcga gcgcatcctc cgcgagatcc 300 gctccgacac cgacgacgac gacgacgacg aagaagaaga gccactcggc gtcgacgcgt 360 cgacgacaac gacgaccaac tcgacgacga cgacggccac ggcggcgagg aggaggagct 420 cgaaccacac ctacacgctg gggcccaagg tgacgcggtg gaacgccaag cggcggcaat 480 ggctgtcccg gaacccgggg ttcccgtccc gcgacgcgcg cggcaagccc aggatcctcc 540 tcgtcaccgg gtcgcagccg gcgccgtgcg acgacgcggc gggcgaccac tacctgctca 600 aggcgaccaa gaacaagatc gactactgcc gcatccacgg catcgagatc gtccacagca 660 tggcgcacct cgaccgcgag ctcgccggct actgggccaa gctgccgctc ctccgccgcc 720 tcatgctctc ccacccggag gtggagtggg tgtggtggat ggacagcgac gcgctcttca 780 ccgacatggc gttcgagctc ccgctcgccc gctacgacac cagcaacctc gtcatacatg 840 gctacccgga gctcctcttc gccaagcgct cctggatcgc cctcaacacc ggcagcttcc 900 tcctccgtaa ctgccaatgg tcactcgagc tgctcgacgc gtgggcgccc atgggaccaa 960 aaggccgcgt ccgcgacgag gccgggaagg ttctgacggc aagcttgacg gggcggccgg 1020 cgttcgaggc ggacgaccag tcggcgctga tccacatact gctgacgcaa aaggagaggt 1080 ggatggagaa ggtgtacgtg gaggacaagt acttcctcca tggattctgg gcggggctcg 1140 tggacaagta cgaggagatg atggagaggc accacccggg cctcggcgac gagcggtggc 1200 cgttcgtcac ccacttcgtc gggtgcaagc cgtgcggcgg ctacggtgac tacccgcggg 1260 agcgctgcct gggcggcatg gagcgcgcgt tcaacttcgc cgacaaccag gtgctccggc 1320 tgtacggatt ccggcaccgg tcgctggcga gcgcccgggt ccggcgggtg gcgaaccgga 1380 cggataaccc gctggtcaac aaggaggccg cgctcaagat ggacgccaag atcgagagct 1440 gaattttttt tatctgaatt aagcttggag ataatcaaat gtgtgatcga tgctacagat 1500 tttgttttat gtgtttgttg aatcaaatac agttcgtttc 1540 // |
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