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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK099730; SV 1; linear; mRNA; STD; PLN; 2216 BP.
XX
AC   AK099730;
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DT   19-JUL-2003 (Rel. 76, Created)
DT   14-DEC-2008 (Rel. 98, Last updated, Version 4)
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DE   Oryza sativa Japonica Group cDNA clone:J013089M16, full insert sequence.
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KW   CAP trapper; FLI_CDNA.
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OS   Oryza sativa Japonica Group
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-2216
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K.,
RA   Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I.,
RA   Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y.,
RA   Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N.,
RA   Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N.,
RA   Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H.,
RA   Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M.,
RA   Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K.,
RA   Murakami K., Murata M., Nagata T., Nakamura M., Namiki T., Narikawa R.,
RA   Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M.,
RA   Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H.,
RA   Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K.,
RA   Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S.,
RA   Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A.,
RA   Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y.,
RA   Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A.,
RA   Yazaki J., Yokomizo S., Yoshimura A.;
RT   ;
RL   Submitted (27-AUG-2002) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences,
RL   Department of Molecular Genetics, Head of Laboratory of Gene Expression;
RL   2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
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RN   [2]
RA   Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N.,
RA   Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T.,
RA   Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K., Shishiki T., Otomo Y.,
RA   Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y.,
RA   Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M.,
RA   Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R.,
RA   Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M.,
RA   Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K.,
RA   Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N.,
RA   Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T.,
RA   Yoshino M., Hayashizaki Y.;
RT   "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from
RT   japonica Rice";
RL   Science 301:376-379(2003).
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DR   GOA; Q5JK52.
DR   InterPro; IPR002504; ATP_NADK.
DR   UniProtKB/Swiss-Prot; Q5JK52; NADK1_ORYSJ.
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CC   This clone is one of the 28K full-length cDNA clones from japonica
CC   rice.
CC   URL : http://cdna01.dna.affrc.go.jp/cDNA/
CC   NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
CC   Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
CC   Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
CC   Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
CC   and Yamamoto,M.
CC   FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
CC   Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
CC   Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
CC   Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
CC   Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
CC   Yoshimura,A., Matsubara,K. and Murakami,K.
CC   Genome Exploration Research Group in Riken Genomic Sciences Center
CC   and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
CC   Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
CC   Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
CC   Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
CC   Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
CC   Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
CC   Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
CC   Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
CC   Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
CC   Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
CC   Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
CC   Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
CC   Yasunishi,A. and Hayashizaki,Y.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2216
FT                   /organism="Oryza sativa Japonica Group"
FT                   /cultivar="Nipponbare"
FT                   /mol_type="mRNA"
FT                   /clone="J013089M16"
FT                   /db_xref="taxon:39947"
FT   CDS             193..1791
FT                   /note="(RAP Annotation release2) ATP-NAD/AcoX kinase family
FT                   protein"
FT                   /note="(Rice Genome Annotation Project) NAD kinase 1,
FT                   putative, expressed"
FT                   /note="mapping to R01-TIGRv4S1-002004F (Chr.1: short
FT                   arm=42504684, long arm=42510572, direction=forward) for
FT                   TIGR Pseudomol ver4"
FT                   /db_xref="GOA:B7EPH4"
FT                   /db_xref="InterPro:IPR017437"
FT                   /db_xref="UniProtKB/TrEMBL:B7EPH4"
FT                   /protein_id="BAG94271.1"
FT                   /translation="MSLDELPHKVSDERVNHDTVTSHESEIGSGSISTVSSTVSSVESE
FT                   KAAYEFLAQTPIKSTDAHLVEFSEAMRTVAKALRRVAEGKAAAQAEAEEWRRKYELEMA
FT                   HKQQRKIKGYGSCANNELEKLASQLTLETPASDQAGCCGNHGICSHEVLQDESPGPNPR
FT                   SSHKLVSRKASFRLSWGCNGDKNGQHKHDFVSFEKGDITTAERSNKQILLKWESSPQTV
FT                   LFITKPNSNSVHVLCAEMVRWLKEHKKINVVVEPRVSKELLTEDSYYNFIQTWDDDEEK
FT                   KMLHTKVDLIVTLGGDGTVLWAASLFKGPVPPVVAFSLGSLGFMTPFPSEQYRDCLDNV
FT                   LNGPFSITLRNRLQCHVIRDAAKDELETEEPILVLNEVTIDRGISSYLTYLECYCDSSF
FT                   VTCVQGDGLIISTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTL
FT                   RVQVPHNSRGQAWASFDGKDRKLLSPGDALICSISPWPVPTACLVDSTTDFLRSIHEGL
FT                   HWNLRKSQSFDGPRD"
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SQ   Sequence 2216 BP; 627 A; 511 C; 530 G; 548 T; 0 other;
     gtatgtggtg ctcctcctcc tcaacagcgt cgcctcgcgt cggcgtcgcc tctcaccacc        60
     caaccaccag tccaccaccc acctctctcc ctcccctccc ctccccaaac ccaacccgag       120
     ccgaggccgg aatttccttt ttggtgcgac gacgacgagg tgagggtgag ccaaccgccg       180
     gatcgcgccg ccatgtcgct cgacgagctt ccgcacaagg tttctgatga gagagtaaac       240
     catgatactg tgacctcaca tgaaagtgaa attgggtctg ggtccatctc cacagttagc       300
     tcaacagtta gttcagtaga atcagagaaa gcagcttatg aattccttgc tcaaactcct       360
     atcaagtcaa ccgatgcaca ccttgttgag ttttcagaag ctatgagaac tgttgcaaaa       420
     gcattgcgac gagttgcaga agggaaagct gctgctcaag ctgaggcgga agagtggagg       480
     cgtaaatatg aattagagat ggcacacaaa cagcagagaa aaatcaaagg ctatggcagt       540
     tgtgccaata atgaattaga aaagttggcc agccaactaa cactggagac gcctgcatct       600
     gatcaagcgg gatgttgtgg aaatcatggt atatgttcac atgaggttct tcaggatgaa       660
     agtcctggtc ctaacccccg atctagtcac aagctggtga gtagaaaggc atcatttaga       720
     ctttcatggg gatgcaatgg ggataaaaac ggccagcaca agcatgattt tgtatcattt       780
     gaaaagggag atataacaac agcagagcgc agcaacaagc agattttgct gaaatgggaa       840
     tcctcgccac aaactgttct tttcataacc aaacctaatt ctaactccgt gcatgttctt       900
     tgtgctgaaa tggtcagatg gcttaaggaa cataaaaaga taaatgttgt tgtagagcca       960
     cgtgttagca aggaactctt aacagaagat tcctactaca atttcatcca aacatgggat      1020
     gatgatgagg agaaaaagat gttgcacaca aaggttgatc tcattgtaac tcttggtggt      1080
     gatgggactg ttttatgggc tgcgtctttg ttcaaagggc cagttcctcc ggttgttgct      1140
     ttctccctag gatcactggg attcatgaca cctttcccaa gtgagcaata tcgtgattgt      1200
     ctggacaatg tgctgaatgg accatttagc atcacattga gaaaccgtct acagtgccat      1260
     gtaatccgtg atgcagcaaa ggatgaactt gagactgagg agccaatttt agtgttaaac      1320
     gaagtcacaa ttgaccgtgg aatatcatct taccttacct acttggaatg ctactgtgat      1380
     agttctttcg ttacatgtgt acaaggggat ggactgatca tatcaacaac atctggaagc      1440
     acggcatatt cattggcagc tggaggatcc atggttcatc cacaggtccc aggaatccta      1500
     ttcacgccga tctgcccgca ttccctgtca ttcaggcctt tgatactgcc tgaatatgtg      1560
     accctgcgcg tacaagtgcc acataacagc aggggccaag cttgggcatc attcgatggc      1620
     aaagatcgga agctgctgtc acccggggat gctctcatct gcagcatttc tccatggcct      1680
     gtgcccacgg cttgcctggt ggattcaaca accgatttcc tacgcagcat ccacgagggt      1740
     ctccactgga acctgaggaa gtcccagtca ttcgacggcc cgcgtgattg atcccagctc      1800
     ctggatacag tccagtgtca gagttgagag tttcagctgg ccatcagaag agtttcccac      1860
     gagtccagct aacaccgagc ggataaatgt acctagcaga gtttgttgct tgttaccatt      1920
     ccatatacat atacatatac atatacatat actagaaggc tgctgcgtgt agatttgggg      1980
     taagtactgg ggactgaaga atgaatcgaa atagaaagta tcgagaatac actgtgccat      2040
     gatgaatgta taacagtaga tgtggcaggc aacatatact gatgtgcact agcatctgaa      2100
     gtagcatggg agagtagata ccggtgacaa gtcatcgaag tgtaaaaaca caacatgtat      2160
     actggtatat atatgtaccc ccatgatctg aatgaaataa tttgaccatg gaaagg          2216
//
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