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EBI DbfetchID AK090009; SV 1; linear; mRNA; HTC; MUS; 1463 BP. XX AC AK090009; XX DT 19-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 15) XX DE Mus musculus cDNA, RIKEN full-length enriched library, clone:G430059K10 DE product:weakly similar to PUTATIVE N-ACETYLGLUCOSAMINE-6-PHOSPHATE DE DEACETYLASE (EC 3.5.1.25) (GLCNAC 6-P DEACETYLASE) [Caenorhabditis DE elegans], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1463 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000124524. DR Ensembl-Gn; ENSMUSG00000036820; Mus_musculus. DR Ensembl-Tr; ENSMUST00000040735; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1463 FT /organism="Mus musculus" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="G430059K10" FT /note="pooled tissues: FT (tissue_type=bladder,sex=mix,cell_line=RCB-0544 FT MBT-2),(tissue_type=colon,sex=mix,cell_line=RCB-0549 FT Cle-H3),(sex=mix,cell_line=RCB-0559 K-1 . FT F1),(sex=mix,cell_line=RCB-0035 FT WEHI-3),(sex=mix,cell_line=RCB-1283 B16 FT melanoma),(sex=mix,cell_line=RCB-0464 FT Meth-A),(sex=mix,cell_line=RCB-0545 FT OHTA),(sex=mix,cell_type=nullipotent stem FT cell,cell_line=CRL-2070 FT NE),(tissue_type=kidney,sex=mix,cell_line=CCL-142 FT RAG),(tissue_type=submandibular FT gland,sex=mix,cell_line=CRL-1734 SCA-9 clone FT 15),(sex=mix,cell_line=CRL-2116 FT JC),(sex=mix,cell_line=CRL-1751 WEHI FT 164),(tissue_type=brain,sex=mix,cell_line=CRL-1443 FT BC3H1),(sex=mix,cell_type=b cells,cell_line=CRL-1669 BCL1 FT Clone 13.20-3B3),(tissue_type=bone FT marrow,sex=mix,cell_type=stroma cell,cell_line=CRL-2028 FT SR-4987),(sex=mix,cell_type=leydig cells,cell_line=CRL-2065 FT MLTC-1),(sex=mix,cell_type=b cells,cell_line=CRL-1702 WEHI FT 231)" FT /db_xref="taxon:10090" FT CDS 72..1301 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="weakly similar to PUTATIVE FT N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE (EC 3.5.1.25) FT (GLCNAC 6-P DEACETYLASE) [Caenorhabditis elegans] FT (SWISSPROT|P34480, evidence: FASTY, 52.4%ID, 95.4%length, FT match=1185)" FT /db_xref="GOA:Q8JZV7" FT /db_xref="HSSP:1UN7" FT /db_xref="InterPro:IPR003764" FT /db_xref="MGI:2443978" FT /db_xref="UniProtKB/Swiss-Prot:Q8JZV7" FT /protein_id="BAC41042.1" FT /translation="MRSGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLF FT FEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVT FT SFCPTLVTSPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSF FT EANAFHDVLATYGPLDNVCIVTLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVA FT VQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIA FT HRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGSIAPMDVCVR FT HFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLDDTLHVQATYISGE FT LVWQAEEAGP" XX SQ Sequence 1463 BP; 270 A; 424 C; 465 G; 304 T; 0 other; cggttcgatt acggctgctc cgggctctgc cggcttgcgc ccaaagcttg ctgggttcgg 60 cgcgactcac gatgcgtagc gggcagtgcg cagcgggggc cccggtgctc cagttcacca 120 actgccgcat cctgcgtggc ggcacgctcc tcagggagga tctgtgggtg cgcgggggcc 180 gaatcctgga cccagaaaag ctgttttttg aggagaggcg tgtggctgat gagcagcggg 240 actgcggagg ccgcatcctg gcgcctggct ttatcgatgt gcagatcaac ggtggatttg 300 gtgttgactt ctccaaggct acggaggacg tgggttcggg ggtcgcccta gtggcccgga 360 ggctcctgtc ccacggtgtc acctccttct gtcccaccct ggtcacctcc ccaccagagg 420 tttatcacaa ggtccttcct cagatccctg tgaagagtgg aggtccccat ggggcagggg 480 tcctcggggt gcacttggag ggcccattca tcagccggga aaagcggggt gcacaccccg 540 aggcctacct ccgctccttt gaagccaatg cttttcatga tgtgttggcc acatatgggc 600 ccctggacaa cgtctgcatt gtgacacttg cccctgaact agaccggagc catgaagtga 660 tccaggcact gacagcccaa ggcatccgtg tgtctctagg gcactcagtg gccgacctgc 720 gggctgcaga agtggcagtg cagagtgggg ccaccttcat cactcacctc ttcaatgcca 780 tgttgccttt ccaccaccgt gacccaggca tagtagggct tctgaccagt gaccagctgc 840 ccccaggcca ctgcatcttc tatgggatga ttgctgatgg catacacacc aaccctgcag 900 ctctgcgcat tgctcaccgg gcccatcccc aggggctggt gctggtcact gatgctgtcc 960 ctgccctggg cttgggcaat ggccgccata cactgggaca gcaggaggtg gaggtagatg 1020 ggctaatagc gtacattgca ggcaccaaga cactgggtgg cagcatagcc cccatggatg 1080 tgtgcgtccg gcatttcctg caggctacag gctgtagtgt ggagtcggcc ctggaagctg 1140 cctccctcca ccctgcccag atgctggggc tggagaagac caaggggagc ctggactttg 1200 gtgctgatgc agactttgtg gtgctcgacg acactctcca tgtccaggcc acttacatct 1260 ctggtgaatt ggtgtggcag gcagaggaag ctgggccgtg actgagggtc ttggctggaa 1320 aggacacttg gagaggccag gcagtccacg gagctggtct ccagggagca agctgagagc 1380 cctgccctat gtctaaaaca gaacctcagt catcactcct ggaggggagg cagtggcttg 1440 gataaataca gacagtggga ctt 1463 // |
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