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EBI DbfetchID AK088865; SV 1; linear; mRNA; HTC; MUS; 1484 BP. XX AC AK088865; XX DT 19-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length DE enriched library, clone:E430029F20 product:L-3-PHOSPHOSERINE PHOSPHATASE DE (EC 3.1.3.3) (PSP) (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) homolog DE [Homo sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1484 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000132914. DR Ensembl-Gn; ENSMUSG00000029446; Mus_musculus. DR Ensembl-Tr; ENSMUST00000118268; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1484 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /dev_stage="2 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="E430029F20" FT /cell_type="thymic cells" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 579..1256 FT /codon_start=1 FT /transl_table=1 FT /note="L-3-PHOSPHOSERINE PHOSPHATASE (EC 3.1.3.3) (PSP) FT (O-PHOSPHOSERINE PHOSPHOHYDROLASE) (PSPASE) homolog [Homo FT sapiens] (SWISSPROT|P78330, evidence: FASTY, 93.3%ID, FT 100%length, match=675)" FT /note="putative" FT /db_xref="GOA:Q99LS3" FT /db_xref="HSSP:1L8L" FT /db_xref="InterPro:IPR004469" FT /db_xref="MGI:97788" FT /db_xref="UniProtKB/Swiss-Prot:Q99LS3" FT /protein_id="BAC40622.1" FT /translation="MVSHSELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVS FT EMTRRAMGGALPFKDALTQRLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQ FT VFLISGGFRSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDEMQPTAESGGKGKVIR FT FLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLGE FT LEE" FT polyA_signal 1463..1468 FT /note="putative" FT polyA_site 1484 FT /note="putative" XX SQ Sequence 1484 BP; 353 A; 368 C; 405 G; 358 T; 0 other; gactctggat cttaaggttc cgttgtgctc gccgcccagc gtcacggttc ggcgctttta 60 agagtttgca gcgtggaggc tgcgcggctc cgcggtgcag gaaaagccct gcaggtcgtg 120 tgtgagggat gcttcggcct ctgcactcga ctgggtgtga caggaagcag aggcgtcggc 180 ctctagttgc agggtgtctc tagctactgg actccgggat gcttccctca cactctcgcg 240 aggtttccca gggatccggc actgggacgc agcttctaaa agtccaggag ctctttcgag 300 ccaactcaac aaactaggaa tcacagatct tacaagctga gttctggctg ctccagttgg 360 aagcccacat gccaaactgc tctggagtcg ccggaggcat cagcagatcc cagccgagcc 420 ttgagtgagg actgtgatct gccttacggg tcacctcact caggactcag cgctcgcacg 480 ttgcagcagc tccagacccc actgctaccg gaaagttaca ggtaccggaa ccgagaagac 540 cagcgcggcc caggaaccgc ggaggaaaac ttcccaggat ggtctcccac tcagagctga 600 ggaagctctt ctgttcagcg gatgcagtgt gctttgatgt tgatagcacc gtcatcagag 660 aagaaggaat cgatgagctg gccaaattct gtggtgtgga ggccgcagtg tctgaaatga 720 cacggagagc catgggagga gcattgcctt ttaaagacgc gctcactcag cgcctggcac 780 tgatccagcc ctccagggat caagtccaga ggctcctagc tgagcacccg ccacatctga 840 ctcctggcat aagggagctg gtaagccgcc tccaggagcg taatgtccag gtgttcctca 900 tctctggtgg ctttcggagc attgtggagc acgttgctgc aaagctcaat atcccaacaa 960 ccaatgtgtt tgccaatagg ctgaagttct actttaatgg tgagtacgca ggttttgatg 1020 agatgcagcc gacagccgag tcgggtggga aaggaaaggt tattcggttt ttaaaggaaa 1080 aatttcactt taagaaaata atcatgattg gagatggagc tacggacatg gaagcctgtc 1140 ctcctgctga tgctttcatt ggctttggag gcaatgtgat caggcagcag gttaaggaca 1200 acgccaagtg gtacatcact gacttcgtgg agctgctggg agaactggag gagtgagctt 1260 gacttcccgc tcactcagaa caactccacc ttctcaaagc cacacagtta ggctcctggg 1320 agaatctagg agacagctat ttttttctac tgtagttcta atattaatat gactactaat 1380 tacatggaga attttatact ctgaattctt tgtgtatatt cttacaaaca ttttacttgt 1440 agctttctga ggtgcacagt aaattaaaga cttttactct tgcg 1484 // |
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