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EBI DbfetchID AK088295; SV 1; linear; mRNA; HTC; MUS; 1536 BP. XX AC AK088295; XX DT 19-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length DE enriched library, clone:E430010H19 product:GDP-MANNOSE PYROPHOSPHORYLASE B DE homolog [Homo sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1536 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR Ensembl-Gn; ENSMUSG00000070284; Mus_musculus. DR Ensembl-Tr; ENSMUST00000047947; Mus_musculus. DR Ensembl-Tr; ENSMUST00000112295; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1536 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /dev_stage="2 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="E430010H19" FT /cell_type="thymic cells" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 210..1292 FT /codon_start=1 FT /transl_table=1 FT /note="GDP-MANNOSE PYROPHOSPHORYLASE B homolog [Homo FT sapiens] (SPTR|Q9Y5P6, evidence: FASTY, 97.8%ID, FT 100%length, match=1080)" FT /note="putative" FT /db_xref="GOA:Q8BTZ7" FT /db_xref="HSSP:1WVC" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR005835" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="MGI:2660880" FT /db_xref="UniProtKB/Swiss-Prot:Q8BTZ7" FT /protein_id="BAC40266.1" FT /translation="MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAG FT VDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPF FT FVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKP FT QVFVSNKINAGMYILSPAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQP FT KDFLTGMCLFLQSLRQKHPERLYSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVE FT DGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNG FT ASVLPHKSIGESVPEPRIIM" XX SQ Sequence 1536 BP; 333 A; 376 C; 469 G; 358 T; 0 other; gctccaacca gttcctcgtc ttctgttctg gctgatcctg gaccccacat cagggtagag 60 caggggggcg aggtgacacc agagttggtc agtctagttg gtgaaacgtg caggtcaggg 120 cacggcgttg ggagtgcgcg gcaggggtcg gtcaggcggc ctgtaagtac tttggaccga 180 tagatccact tctaacatct gcagacgcca tgaaggcact gatcttggtg ggagggtatg 240 ggacacggtt gcggccgctg acgttgagca ctccgaagcc attggtggac ttctgcaata 300 agcccatctt gctgcatcaa gtggaggcgc ttgctgcggc aggtgtggac cacgtgatcc 360 tggcagtgag ctacatgtca cagatgttgg agaaggaaat gaaggcacaa gagcaaaggc 420 ttggaatccg aatctctatg tctcatgaag aggagccttt ggggacagct gggcctctgg 480 cgttggcccg agacctacta tctgagactg ccgacccttt cttcgttctc aacagtgatg 540 tgatatgtga tttccccttc caagccatgg tgcagtttca tcggcaccat ggccaagagg 600 gctccatctt ggttaccaag gtggaagagc cttccaagta tggtgtggtg gtatgtgagg 660 ctgacacagg ccgcatccac cgttttgttg agaagccaca ggtgtttgtg tccaataaga 720 tcaacgcagg catgtacatc ctgagccctg ctgtgctgca gcgcatccag ctgaagccta 780 catccattga gaaggagatc ttcccagtta tggccaagga ggggcagcta tatgccatgg 840 agctgcaggg cttctggatg gacattggac agcccaagga tttcctcact ggcatgtgcc 900 tcttcctaca atcgctgaga cagaagcatc cagagagact gtactcaggc cctggcattg 960 tggggaatgt acttgtggac ccaagtgccc gtatcggtca gaactgcagc attggcccca 1020 atgtaagcct gggtcctggt gtggtggtgg aggatggtgt gtgcatccgg cgatgcacag 1080 tgcttcgtga tgctcacatc cgctcccatt cctggcttga gtcatgcatc gtgggctggc 1140 gctgccgtgt gggccaatgg gtgcgcatgg agaatgtaac agtgctgggt gaagatgtca 1200 tagttaatga tgaactgtac ctcaatggag ccagcgtgct gccccacaag tctatcgggg 1260 agtcagtacc agaacctcgt attatcatgt gaaggatatg gagggctggc caagcatcca 1320 ctttgccatc agcagggtag gactcaatgc ttcacgaggc cctggacttg gtgccatttg 1380 tctagggagg agtggatgac tctgaagctg tcggacttct gccttctggt ggggacagac 1440 atggacagga ccctgctggg tgtaacccac aagcccccac tccctcaaga agagcgggcc 1500 cagggctgtt tggaataata atttaatgct cactgt 1536 // |
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