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EBI DbfetchID AK087992; SV 1; linear; mRNA; HTC; MUS; 4374 BP. XX AC AK087992; XX DT 19-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length DE enriched library, clone:E430001P04 product:ISOLEUCYL-TRNA SYNTHETASE, DE CYTOPLASMIC (EC 6.1.1.5) (ISOLEUCINE--TRNA LIGASE) (ILERS) (IRS) homolog DE [Homo sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-4374 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000186669. DR Ensembl-Gn; ENSMUSG00000037851; Mus_musculus. DR Ensembl-Tr; ENSMUST00000047363; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..4374 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /dev_stage="2 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="E430001P04" FT /cell_type="thymic cells" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 69..3857 FT /codon_start=1 FT /transl_table=1 FT /note="ISOLEUCYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.5) FT (ISOLEUCINE--TRNA LIGASE) (ILERS) (IRS) homolog [Homo FT sapiens] (SWISSPROT|P41252, evidence: FASTY, 90.6%ID, FT 99.8%length, match=3792)" FT /note="putative" FT /db_xref="GOA:Q8BU30" FT /db_xref="InterPro:IPR001412" FT /db_xref="InterPro:IPR002300" FT /db_xref="InterPro:IPR002301" FT /db_xref="InterPro:IPR009008" FT /db_xref="InterPro:IPR009080" FT /db_xref="InterPro:IPR013155" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015905" FT /db_xref="InterPro:IPR018353" FT /db_xref="MGI:2145219" FT /db_xref="UniProtKB/Swiss-Prot:Q8BU30" FT /protein_id="BAC40081.1" FT /translation="MVQQVPENISFPAEEEKILEFWSKHNCFQECLKQSKLRPKFTFYD FT GPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIKG FT PEDVAKMGIAEYNKQCRAIVMRYSAEWKSTVTRLGRWIDFDNDYKTLYPQFMESVWWVF FT KQLYDKGLVYRGVKVMPFSTACGTPLSNFESNQNYKDVQDPSVFVTFPLEEDENTSLVA FT WTTTPWTLPSNLALCVNPEIQYVKIKDVARGKLFILTEARLSALYKQESDYEILERFPG FT ASLKGKKYKPLFDYFIKCKENGAFTVLVDHYVKDEEGTGVVHQAPYFGADDHRVCMDFN FT IIQKDSVPVCPVDASGCFTEEVTHFVGQYVKDADKNIIRMLKEQGRLLAAGTFTHSYPF FT CWRSDTPLIYKSVPSWFVRVEPMVDQLLKNNDLCYWVPEFVREKRFGNWLKEARDWAIS FT RNRYWGTPIPLWVSEDLEEVVCIGSVAELEELSGTKISDLHRESIDHLTIPSRCGKAPL FT RRVSEVFDCWFESGSMPYAQVHYPFESKREFEDAFPADFIAEGIDQTRGWFYTLLVLAT FT ALFGQPPFKNVIVNGLILASDGQKMSKRKKNYPDPVSIIDKYGADALRLYLINSPVVRA FT ENLRFKEEGVRDVLKDVLLPWYNAYRFFIQNVFRLHKEEEVKFLYNEHTVRESPNITDR FT WVLSFMQSLLGFFETEMAAYRLYTVVPRLVKFVDILTNWYVRMNRRRLKGESGVEDCVM FT ALETLFSVLLSLCRLMAPYTPFLTELMYQNLKLLIDPASLRDKDTLSIHYLMLPRVREE FT LIDKKTENAVSRMQSVIELGRVIRDRKTIPIKYPLKEIVVIHQDPEALEDIRSLEKYII FT EELNVRKVTLSTDKNKYGIRLRAEPDHMVLGKRLKGAFKAVMMAIKRLSNEELERFQKS FT GSIVVEGHELHEEDIRLMYTFDQATGGTAQFEAHSDAQALVLLDVTPDQSMVDEGMARE FT VINRIQKLRKKCNLVPTDEITVYYNAKSEGRYLNNVIESHTDFVFATIKAPLKPYPVPT FT SDNILIQEQTQLKGSELEITLTKGSCVPGPACAYVNLNICANGTEQGGVLLLENPKGDN FT QLNLVKLKTVVTSVFGVKNAKLSVFHGETEIQNQTDLLSLSGRTLCVTAGASPSPISSP FT STLLCQYLNLQLLNAEPQECLTGTVGTLLLENPLGQNGLTHQGLVHEAAKVFGLRSRRL FT RLFLNETQTQEITEDIPMKTLNMKTVYVSVLPTTADG" FT polyA_signal 4348..4353 FT /note="putative" FT polyA_site 4374 FT /note="putative" XX SQ Sequence 4374 BP; 1197 A; 1034 C; 1077 G; 1066 T; 0 other; gacctccaga cgcggaacgt ggtcgcaggc tgcaacctga gcgagctctc cgggttccca 60 gcaacagaat ggttcaacaa gttccagaaa acatcagttt tcctgctgaa gaagaaaaaa 120 tcttggagtt ctggtccaaa cataactgtt tccaggaatg cctcaaacag tcaaaactca 180 ggccaaagtt taccttctat gatgggcctc cctttgctac tggactgcct cactatggac 240 acatacttgc tgggacaatc aaagatatcg ttacgagata cgctcaccag agcgggtttc 300 acgttgacag aagattcggg tgggactgtc acggcttacc tgtggagtac gaaatcgata 360 agacactggg catcaaaggc ccggaggatg tggccaaaat ggggattgca gagtacaaca 420 agcagtgccg agcaatcgtg atgagatact ccgctgagtg gaagtctact gttaccagac 480 tcggccgatg gatcgacttt gacaatgact acaaaacact atacccacag ttcatggaat 540 cagtctggtg ggtcttcaag cagctgtatg acaaaggcct cgtgtacaga ggcgtgaagg 600 tcatgccctt ctccaccgcg tgtggcactc cactctccaa cttcgaatct aaccagaatt 660 acaaggatgt tcaggatccc tcagtatttg taacattccc tttggaggaa gatgaaaata 720 catccttagt tgcttggaca accactcctt ggactctacc cagtaacctt gcactatgcg 780 tcaatccaga aatacagtat gtgaagatca aagatgtggc caggggaaaa ttattcatct 840 taacggaagc cagattatcg gccctctata agcaagagag cgactatgag atacttgaaa 900 ggtttcctgg tgcctctctc aaaggcaaga aatacaagcc gttgtttgac tactttatta 960 agtgtaagga gaacggtgcc ttcaccgtgc ttgtcgacca ctatgtgaag gatgaagaag 1020 gcacaggcgt tgtgcaccag gctccttact ttggtgctga tgatcatcgt gtctgtatgg 1080 acttcaacat tattcagaaa gactcagtcc ctgtttgtcc tgtggatgct tcaggctgct 1140 tcacagagga agtgacacat tttgtggggc agtatgtgaa ggatgctgac aaaaatatca 1200 ttaggatgtt gaaggagcag ggccggctgc tggcggcggg cacgttcact cacagctacc 1260 ctttctgctg gaggtcagac acgcccctca tttacaagtc tgtgcccagc tggtttgtgc 1320 gggtggagcc catggtggac cagctactga agaacaacga cctgtgctac tgggtcccag 1380 agtttgtacg agaaaaacgg tttggaaatt ggctgaagga ggcccgtgac tgggcaattt 1440 ccagaaacag atactggggc acccccatcc cactgtgggt cagcgaagac ttggaggagg 1500 tagtgtgcat tggatcagtg gcagagcttg aagaactgtc gggaacaaaa atctcagatc 1560 tccacagaga gagcatcgac cacctgacca tcccatcccg ctgcgggaaa gcaccattgc 1620 ggcgcgtctc tgaggtgttt gactgctggt tcgagagtgg aagtatgccc tatgcccagg 1680 tccattatcc gttcgagagc aagcgcgagt ttgaggatgc ctttcctgca gacttcattg 1740 ctgaaggcat cgatcaaacc agaggatggt tttacaccct gctggtgcta gccacagcgc 1800 tctttggaca gccacctttc aagaatgtga ttgtgaatgg cctcatcttg gcaagtgatg 1860 gccaaaaaat gagcaagcgg aaaaagaact acccagatcc agtttccatc atcgataagt 1920 atggtgcgga cgccctcagg ttatatctga tcaattcccc tgtggtaaga gcagaaaacc 1980 tgcgcttcaa ggaggaaggt gtgcgggatg tcctcaaaga tgtgctgctc ccgtggtaca 2040 acgcttaccg cttcttcatc cagaacgtct ttaggctcca caaggaagaa gaagtgaagt 2100 tcctatacaa cgagcataca gtcagagaaa gccctaacat caccgaccgc tgggttctgt 2160 ccttcatgca gtcgctcctt ggcttctttg agaccgaaat ggcagcttac aggctgtaca 2220 ctgtggtacc tcgcctggtc aagtttgtag atattctaac caactggtat gtccgaatga 2280 acaggaggag gttaaagggt gagagtgggg tggaagactg tgtcatggct ctggagacac 2340 tgttcagtgt cctgctttct ctgtgcagac tgatggcccc ttacacgccc tttctgactg 2400 agctgatgta ccagaatcta aagctgctga ttgatcctgc ttctctccgg gacaaggaca 2460 cactcagcat ccactacctc atgctgcctc gagttcgaga ggagctgatt gacaagaaaa 2520 ctgagaacgc cgtgtctagg atgcagtctg tgatcgagct tggaagagtg atacgagacc 2580 gaaaaactat tccaataaag tatcctctga aggaaattgt ggtcatccac caagacccag 2640 aagctctaga ggatatcagg tccttggaga agtatatcat tgaggaatta aatgttcgaa 2700 aagtcacgct gtctactgat aaaaacaagt acggtatccg actaagggct gaaccagatc 2760 acatggtcct tgggaagcgc ctgaaggggg ccttcaaagc ggtgatgatg gccataaagc 2820 ggctgagcaa tgaggagctg gagcggtttc agaagagcgg gagcattgtt gtggaaggcc 2880 acgaactgca tgaggaagac attcgcctca tgtacacctt tgaccaggcc acgggaggga 2940 ccgcgcagtt tgaagcacac tctgatgctc aggctctagt tctcttagat gtcacacctg 3000 accagtcaat ggtggatgag ggcatggctc gggaagtcat caatcgcatc cagaagcttc 3060 gaaagaagtg caatctggtt ccaacggatg aaataacagt ttactataat gcaaaatctg 3120 aaggaagata cttgaataat gtcattgaaa gccacactga cttcgtattt gccacaatca 3180 aagctccctt gaagccatat ccagttccaa catcagataa tatccttatt caagagcaaa 3240 cacagttaaa ggggtccgag ctggaaatca cgctcaccaa aggatcgtgt gtgcctggcc 3300 ctgcttgtgc ttatgtgaac cttaacattt gtgcaaatgg caccgagcaa ggtggagtgt 3360 tgctcctgga gaatccgaaa ggtgataatc agctgaacct ggtgaaactg aagactgttg 3420 ttaccagcgt atttggtgtt aaaaatgcaa agctgtcagt cttccacggt gaaacagaaa 3480 tacagaacca aactgacttg ctgagcctca gtgggaggac gctgtgtgtg actgcagggg 3540 catccccgtc tcccatcagc agccccagca ccctgctgtg tcagtacctc aacctgcagc 3600 tcctgaacgc agagccacaa gagtgtttaa caggaactgt gggcaccctc ctgcttgaaa 3660 acccactcgg acagaacggc ctcacccacc aagggcttgt gcatgaagca gccaaggtgt 3720 tcggactgag gagcaggagg ctaaggctgt tcctgaatga gactcaaaca caagaaatta 3780 cagaagatat cccaatgaag acgttgaata tgaagactgt atatgtctct gtcttgccaa 3840 caactgcaga tggctaacag ctatcagtat gccttcagtc agtcttcctt gaatctaccc 3900 atctccttat acacacactc acacactcac actctgtatg tctctctctc tctctctctc 3960 tctctgtctc tctctcacac acacatacac acacacacat gggttcagtg aagttatctc 4020 cttgggcact tgtcaaatat gctgctttta accggcgatt ctaatgggat tgactgactg 4080 gagacctcac atcatgttca catttaacct taaacaccta tgcagtcatg ttgggggagt 4140 gtcccaatgt tacctcaaca ccacgaagct tatttctata ctggagttct tcagtataga 4200 aagtggaagt ggtttaaatg gcatagtaca tatacatata tatatggcct tgtaaaacag 4260 atttgagacc ttgtgaagaa atggatatgt tatatatttc tgctacctgg attttcctgg 4320 gtaatttgat ggaatatttt acgtttgatt aaatcaaaac agtaaacact ctcc 4374 // |
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