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EBI DbfetchID AK084719; SV 1; linear; mRNA; HTC; MUS; 1736 BP. XX AC AK084719; XX DT 19-DEC-2002 (Rel. 74, Created) DT 20-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, DE clone:D330035G17 product:protein phosphatase 1, regulatory (inhibitor) DE subunit 3A, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1736 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000169362. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1736 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="13 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="D330035G17" FT /tissue_type="heart" FT /db_xref="taxon:10090" FT CDS <1..>1736 FT /codon_start=1 FT /transl_table=1 FT /note="protein phosphatase 1, regulatory (inhibitor) FT subunit 3A (MGD|MGI:2153588 GB|NM_080464, evidence: BLASTN, FT 100%, match=1736)" FT /note="putative" FT /note="start codon is not identified" FT /db_xref="GOA:Q99MR9" FT /db_xref="InterPro:IPR005036" FT /db_xref="MGI:2153588" FT /db_xref="UniProtKB/Swiss-Prot:Q99MR9" FT /protein_id="BAC39262.2" FT /translation="SGSSEDMYLDTPTSASRRVSFADSLGFSLVSVKEFDCWELPSVST FT DFDLSGDVFHTDEYVLSPLFDLPSSKEKLMEQLQVQKAVLESAEHLPGSSMKGIIRVLN FT ISFEKLVYVRMSLDDWQTHYDILAEYVPNSCDGETDQFSFKISLVPPYQKEGGKVEFCI FT RYETSAGTFWSNNNGTNYILVCQKKRKEPEPVKPLEEAPSRQIKGCLKVKSRSKEEPLL FT APEENKFETLKFTESYIPTIICSHEDKDDLGANHPNVDDINKKHDEHNGKELDLMINQR FT LITSQDEKNTFATDTVNFTNKAEGSEKKQAYHEINTDLFMGPLSPSLSAESSLKRDFYH FT SRSSSPGNEYGHPHSEEIISDMGEKGPSLGDTSSDELMQLELCSKEDLDDNANPANGSG FT RVCSSFDQRMACGLKNNEAGIKKTGIQDYKYSHGDSTKLEESNASSRDDYAKVDNKKEK FT QTCLGVNENPSKNFQSVFQTQEGHMGYPKISTEGDKANNQDLTSLLSKDITANTWAVTV FT DPCPSTNAKRSWREVGSGSNLEPGTSDLSSPRNFSPLTDDHLFQADRENSDSSNPENQN FT MNT" XX SQ Sequence 1736 BP; 590 A; 335 C; 378 G; 433 T; 0 other; tcaggatctt cggaagacat gtatctggac actccaacct cagcttcccg gagagtttcc 60 tttgctgaca gcctgggatt cagccttgtg tctgttaaag aatttgattg ctgggaacta 120 cccagtgttt caactgattt tgacttaagt ggggatgttt tccacacaga tgaatatgtt 180 ttatctccac tgtttgactt gccttcttca aaagaaaagc ttatggaaca actccaagtc 240 cagaaagccg tgctggagtc cgctgaacac cttcccgggt caagcatgaa gggcattatt 300 cgagtcctga acatttcttt tgagaagtta gtgtatgtgc gcatgtcttt ggatgactgg 360 cagacacatt atgacatttt agcagaatat gttcctaact cgtgcgacgg tgagactgac 420 caattctctt ttaagatttc attggttcca ccttatcaaa aagagggcgg taaagtggag 480 ttttgtatac gctatgaaac ttctgctggc acattttggt caaataataa tggcacaaat 540 tatatattgg tttgtcaaaa gaagaggaag gagccagagc ctgtaaagcc attggaagaa 600 gcacctagca gacaaataaa aggctgctta aaggtaaaat cacgcagtaa agaagaacca 660 ttgctagcac cagaagaaaa taaatttgag actttaaagt tcacagagtc ctacatccca 720 acaatcattt gttctcacga ggacaaggat gacttgggag ccaatcatcc aaatgtagac 780 gatatcaaca agaagcatga cgaacacaat ggaaaggagc tagacttgat gataaaccaa 840 cggttaataa cttcccagga tgaaaagaat acatttgcaa cagatacagt caattttaca 900 aataaagctg aagggtcaga gaagaagcaa gcttaccatg aaatcaacac tgacttgttc 960 atggggcctt tgtctccaag tttatcagca gaaagttcct taaagcgaga tttctatcat 1020 agcagaagtt cttccccagg aaatgaatat ggtcatccac attcagaaga aattatttca 1080 gatatgggag aaaaaggtcc atcactggga gacactagtt ctgatgagtt aatgcaattg 1140 gaactctgca gcaaggaaga cctggatgat aatgccaacc cagccaatgg gagtggcaga 1200 gtgtgctctt ccttcgatca aagaatggca tgtggtctca agaataatga agcaggaatc 1260 aagaaaactg gaatacaaga ttacaaatat tcacatggag attccacaaa attggaagag 1320 tcaaatgcat cttccagaga tgattatgcc aaagtcgata ataaaaagga gaagcaaaca 1380 tgcttaggtg ttaatgaaaa cccaagcaag aattttcaat cagtattcca gacccaagag 1440 ggacacatgg ggtacccaaa aataagcact gaaggggata aagctaataa ccaagacttg 1500 acaagtctac tgagcaaaga tattacagct aacacctggg cggtgacagt ggatccctgt 1560 ccttccacaa atgcaaaaag gagttggaga gaagttggaa gtggtagcaa tttagaacca 1620 ggaactagtg atcttagttc tccaaggaat ttcagccctc tgactgatga tcatcttttt 1680 caagctgaca gggaaaactc agactctagc aatcctgaaa atcagaatat gaacac 1736 // |
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