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EBI DbfetchID AK077695; SV 1; linear; mRNA; HTC; MUS; 1876 BP. XX AC AK077695; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched DE library, clone:5730529K24 product:hypothetical NAD(P)-binding Rossmann-fold DE domains structure containing protein, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1876 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000181292. DR Ensembl-Gn; ENSMUSG00000038936; Mus_musculus. DR Ensembl-Tr; ENSMUST00000111126; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1876 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="8 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="5730529K24" FT /tissue_type="whole body" FT /db_xref="taxon:10090" FT CDS 76..1365 FT /codon_start=1 FT /transl_table=1 FT /note="hypothetical NAD(P)-binding Rossmann-fold domains FT structure containing protein (SCOP|51735, evidence: SCOP)" FT /note="putative" FT /db_xref="GOA:Q8R127" FT /db_xref="InterPro:IPR005097" FT /db_xref="MGI:1924486" FT /db_xref="UniProtKB/Swiss-Prot:Q8R127" FT /protein_id="BAC36962.1" FT /translation="MATEQRPFHLVVFGASGFTGQFVTEEVAREQIASEQSSRLPWAVA FT GRSKEKLQQVLEKAAQKLGRPSLSSEVGVIICDISNPASLDEMAKQAKLVLNCVGPYRF FT YGEPVVKACIENGTSCIDICGEPQFLELMHAKYHEKAAEKGVYIIGSSGFDSIPADLGV FT LYTRNQMNGTLTAVESFLTINTGPEGLCIHDGTWKSAIYGFGDKGSLRKLRSVSCLKPV FT PIVGTKLKRRWPVSYCRELNSYSIPFLGSDISVVKRTQRYLHENLEDSPVQYAAYVTVG FT GITSVIKLMFAGLFFLFFVKFSIGRQLLIKFPWLFSFGYFSKQGPTQKQMDETSFTMTF FT FGQGYSHGTCVEKNKPNIRICTQVKGPEAGYVATPIAMVQAAMTFLSDASDLPKGGGVF FT TPGAAFSRTKLIDRLNKHGIEFSVISSSEV" FT polyA_signal 1854..1859 FT /note="putative" FT polyA_site 1876 FT /note="putative" XX SQ Sequence 1876 BP; 491 A; 395 C; 468 G; 522 T; 0 other; gactggggtc ccggcctgag gcgcaggcgc ggtggactca gcccgccccg ggctgcagct 60 cgctgtggac tcgtcatggc gacggagcag aggcctttcc acctggtggt gttcggcgcc 120 tctggcttca ccggccagtt cgtgacggag gaggtggccc gggagcagat agcctcggag 180 cagagctccc gcctgccctg ggccgtggcg ggtcgctcca aggagaagct gcagcaagtg 240 ctggagaagg ctgcccagaa actgggaaga ccatcactat catctgaagt tggagtcata 300 atctgtgata tcagtaatcc agcctcactt gatgaaatgg ctaaacaggc aaagcttgtc 360 ctcaactgcg taggaccgta tcgattttat ggagaacctg tagtaaaagc atgtattgaa 420 aatggaacaa gttgtattga catctgtggg gaacctcagt ttctggaact aatgcatgcg 480 aagtatcatg agaaagctgc agagaagggg gtttatatca ttggaagcag tggctttgac 540 tccatcccag cagatctagg agtgctatac accaggaacc agatgaacgg tactttgact 600 gctgtagaaa gcttcctgac aataaataca ggacctgagg ggttgtgtat tcatgatgga 660 acctggaagt cggcaattta tggttttggc gataagggta gtttaagaaa actacggagt 720 gtatcatgtc tgaaacctgt cccaattgtt ggtacaaagt tgaaaagaag gtggccagtc 780 agctattgta gagagctgaa ctcgtattcc attccttttt tgggatctga tatatctgtt 840 gtgaaaagga ctcagcgtta cttacatgaa aatttagagg actcaccagt tcagtatgct 900 gcttatgtga cggtgggagg catcacctct gtgattaagc tgatgtttgc aggactgttc 960 tttttattct ttgtgaagtt tagcattgga agacaacttc tcataaaatt cccatggctc 1020 ttttcctttg gctatttttc aaaacaaggt ccaacacaaa aacagatgga tgagacatca 1080 tttacaatga cattctttgg tcaaggatac agccatggca cttgtgttga aaagaacaaa 1140 ccaaatatcc gaatctgcac tcaagtgaag ggaccagagg ctggctacgt ggctactccc 1200 atagccatgg ttcaggctgc catgactttt ctgagtgacg cctctgacct tccaaaaggg 1260 ggcggtgtct ttacacctgg agcagctttc tccagaacaa agttgattga cagactcaac 1320 aaacatggca ttgaatttag tgtcattagc agctccgaag tctaaacgtt tgaagactaa 1380 ccgaatcata aaatgcacaa accgcgtctg tatttgatat gtgaaattct tctataagcc 1440 tatctgactg tatgtggact gtcaagtata aaatatctgt acattaaaag caggaaatta 1500 tactatctta tcctaaactt catatctcag ctgtttttat gattttattg cttgtgagag 1560 gaaactaaca ttctccttac gtttttattg acaagtgaac tggaaggtca gatggtgaag 1620 agagcccctg ttggtgttgc tgacagcatt ccttagtgac ggagcgtggc tgctgttagg 1680 ctgtggcagt agagtctgcc ttccctgccc tggtgttgtg gaatctcacc ctcctctaag 1740 ttcctctgcg tagcatgtga gcgtttgcta agtgaaactg tacttctact tcagtctgct 1800 ttctcaccca tctactccat ggactgatct tggattgttt aactcagttg aataataaag 1860 ggttatttat tgagcg 1876 // |
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