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EBI DbfetchID AK077584; SV 1; linear; mRNA; HTC; MUS; 1444 BP. XX AC AK077584; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched DE library, clone:5730457F11 product:weakly similar to PUTATIVE DE N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE (EC 3.5.1.25) (GLCNAC 6-P DE DEACETYLASE) [Caenorhabditis elegans], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1444 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000124524. DR Ensembl-Gn; ENSMUSG00000036820; Mus_musculus. DR Ensembl-Tr; ENSMUST00000040735; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1444 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="8 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="5730457F11" FT /tissue_type="whole body" FT /db_xref="taxon:10090" FT CDS 53..1282 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="weakly similar to PUTATIVE FT N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE (EC 3.5.1.25) FT (GLCNAC 6-P DEACETYLASE) [Caenorhabditis elegans] FT (SWISSPROT|P34480, evidence: FASTY, 52.1%ID, 95.4%length, FT match=1185)" FT /db_xref="GOA:Q8JZV7" FT /db_xref="HSSP:1UN7" FT /db_xref="InterPro:IPR003764" FT /db_xref="InterPro:IPR006680" FT /db_xref="InterPro:IPR011059" FT /db_xref="MGI:2443978" FT /db_xref="UniProtKB/Swiss-Prot:Q8JZV7" FT /protein_id="BAC36877.1" FT /translation="MRSGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLF FT FEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVT FT SFCPTLVTSPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSF FT EANAFHDVLATYGPLDNVCIVTLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVA FT VQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIA FT HRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGSIAPMDVCVR FT HFLQATGCSVESAMEAASLHPAQMLGLEKTKGSLDFGADADFVVLDDTLHVQATYISGE FT LVWQAEEAGP" XX SQ Sequence 1444 BP; 269 A; 416 C; 461 G; 298 T; 0 other; gggggctctg ccggcttgcg cccaaagctt gctgggttcg gcgcgactca cgatgcgtag 60 cgggcagtgc gcagcggggg ccccggtgct ccagttcacc aactgccgca tcctgcgtgg 120 cggcacgctc ctcagggagg atctgtgggt gcgcgggggc cgaatcctgg acccagaaaa 180 gctgtttttt gaggagaggc gtgtggctga tgagcagcgg gactgcggag gccgcatcct 240 ggcgcctggc tttatcgatg tgcagatcaa cggtggattt ggtgttgact tctccaaggc 300 tacggaggac gtgggttcgg gggtcgccct agtggcccgg aggctcctgt cccacggtgt 360 cacctccttc tgtcccaccc tggtcacctc cccaccagag gtttatcaca aggtccttcc 420 tcagatccct gtgaagagtg gaggtcccca tggggcaggg gtcctcgggg tgcacttgga 480 gggcccattc atcagccggg aaaagcgggg tgcacacccc gaggcctacc tccgctcctt 540 tgaagccaat gcttttcatg atgtgttggc cacatatggg cccctggaca acgtctgcat 600 tgtgacactt gcccctgaac tagaccggag ccatgaagtg atccaggcac tgacagccca 660 aggcatccgt gtgtctctag ggcactcagt ggccgacctg cgggctgcag aagtggcagt 720 gcagagtggg gccaccttca tcactcacct cttcaatgcc atgttgcctt tccaccaccg 780 tgacccaggc atagtagggc ttctgaccag tgaccagctg cccccaggcc actgcatctt 840 ctatgggatg attgctgatg gcatacacac caaccctgca gctctgcgca ttgctcaccg 900 ggcccatccc caggggctgg tgctggtcac tgatgctgtc cctgccctgg gcttgggcaa 960 tggccgccat acactgggac agcaggaggt ggaggtagat gggctaatag cgtacattgc 1020 aggcaccaag acactgggtg gcagcatagc ccccatggat gtgtgcgtcc ggcatttcct 1080 gcaggctaca ggctgtagtg tggagtcggc catggaagct gcctccctcc accctgccca 1140 gatgctgggg ctggagaaga ccaaggggag cctggacttt ggtgctgatg cagactttgt 1200 ggtgctcgac gacactctcc atgtccaggc cacttacatc tctggtgaat tggtgtggca 1260 ggcagaggaa gctgggccgt gactgagggt cttggctgga aaggacactt ggagaggcca 1320 ggcagtccac ggagctggtc tccagggagc aagctgagag ccctgcccta tgtctaaaac 1380 agaacctcag tcatcactcc tggaggggag gcagtggctt ggataaatac agacagtggg 1440 actt 1444 // |
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