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EBI DbfetchID AK072689; SV 1; linear; mRNA; STD; PLN; 3167 BP. XX AC AK072689; XX DT 19-JUL-2003 (Rel. 76, Created) DT 14-DEC-2008 (Rel. 98, Last updated, Version 4) XX DE Oryza sativa Japonica Group cDNA clone:J023143H13, full insert sequence. XX KW CAP trapper; FLI_CDNA. XX OS Oryza sativa Japonica Group OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; OC Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-3167 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K., RA Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I., RA Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y., RA Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N., RA Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N., RA Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H., RA Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M., RA Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K., RA Murakami K., Murata M., Nagata T., Nakamura M., Namiki T., Narikawa R., RA Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M., RA Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H., RA Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K., RA Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S., RA Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A., RA Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y., RA Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A., RA Yazaki J., Yokomizo S., Yoshimura A.; RT ; RL Submitted (05-DEC-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, RL Department of Molecular Genetics, Head of Laboratory of Gene Expression; RL 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan XX RN [2] RA Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., RA Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., RA Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K., Shishiki T., Otomo Y., RA Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., RA Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., RA Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., RA Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., RA Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., RA Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., RA Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., RA Yoshino M., Hayashizaki Y.; RT "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from RT japonica Rice"; RL Science 301:376-379(2003). XX DR GOA; Q53RB0. DR InterPro; IPR000907; LipOase. DR InterPro; IPR001024; LipOase_LH2. DR InterPro; IPR001246; LipOase_pln. DR InterPro; IPR008976; Lipase_LipOase. DR InterPro; IPR013819; LipOase_C. DR InterPro; IPR020833; LipOase_Fe_BS. DR InterPro; IPR020834; LipOase_CS. DR UniProtKB/Swiss-Prot; Q53RB0; LOX4_ORYSJ. XX CC This clone is one of the 28K full-length cDNA clones from japonica CC rice. CC URL : http://cdna01.dna.affrc.go.jp/cDNA/ CC NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., CC Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., CC Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., CC Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. CC and Yamamoto,M. CC FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., CC Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., CC Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., CC Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., CC Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., CC Yoshimura,A., Matsubara,K. and Murakami,K. CC Genome Exploration Research Group in Riken Genomic Sciences Center CC and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., CC Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., CC Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., CC Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., CC Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., CC Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., CC Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., CC Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., CC Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., CC Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., CC Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., CC Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., CC Yasunishi,A. and Hayashizaki,Y. XX FH Key Location/Qualifiers FH FT source 1..3167 FT /organism="Oryza sativa Japonica Group" FT /cultivar="Nipponbare" FT /mol_type="mRNA" FT /clone="J023143H13" FT /db_xref="taxon:39947" FT misc_feature 1..3167 FT /note="(Rice Genome Annotation Project) lipoxygenase 4, FT putative, expressed" FT /note="mapping to R03-TIGRv4S1-001308F (Chr.3: short FT arm=28056076, long arm=28062460, direction=forward) for FT TIGR Pseudomol ver4" XX SQ Sequence 3167 BP; 723 A; 900 C; 925 G; 619 T; 0 other; gggtaggatg gtactatcca atagtttccc tgttacgaac tcctccgctt tggtgactcg 60 cgacggcgat gcgcgggcac cacaaagccg ccgcggctgg tggccgtggc cgcgtcgcta 120 taaaatccca ccgcggcttc gtctctctct ccatcagccc gtctcgctct tgctccgcgt 180 tccgcttggc tttccggctt tagcagagta gtgagagaga gagagagaga gagagagaga 240 gagaggagga ggaggaggag gaggagggga ttgtgacttg tgatctgcga ggatgcaggt 300 gcaggggttc tttgacaggt tgacggggag gaacaaggag gcgtggaagg aagggaggat 360 ccgtgggacg gcggtgctgg tgaagaagga cgtgctcggc ctcggcgact tccacgcctc 420 cctcctcgac ggcgtccaca acatcctcgg ccacaaggag ggcgtcgcct tccgcctcgt 480 cagcgccacc gcccgcgacc caagcaatgg agggaggggg aagctgggga agccggcgca 540 cctggaggag ctggtggtga cgatgaagtc gacggcggcg ggggagtcgg tgttccgggt 600 ggcgttcgag tgggacgagt cgcaggggat ccccggcgcc gtcgtcgtca ccaactccaa 660 ccggtccgag ttcttcctca agacgctcac cctcgacggc gtccccggca agggcaccgt 720 cgtcttcgtc gccaactcgt ggatctaccc cgccgacaac taccagtacg agcgcgtctt 780 cttcgccaac gatacatatc tgcctagcaa aatgcctgca cctttgatcc cttaccggca 840 agaagaactc aacattctac gaggggacgg taaaattgga ccatacaagg agcatgaccg 900 tatctaccgt tatgattact ataacgacct tggccaacca gacaaaggca gtaaactagt 960 acgaccagtc cccggtggca gccaagaact cccctatccc cgtcgaggca gaactggccg 1020 ggccccaaca aagactgacc caaatacaga aagcaggctt cctctgctgg acttgaacat 1080 ttatgtccca cgcgacgaac ggttcgggca cctcaagatg tcagacttcc ttgggtactc 1140 tcttaaggct attgttgagg gtgttctccc aataataagg acctatgtcg atacgacacc 1200 aaaggagttt gattcttttc aagacatcat ggaactctat gaaggtggat tgaaagtggc 1260 caatgcctct gcactagcag agatcaagaa gagagttccc tttgaactta ttaagagtct 1320 tttgccagtt gctggcgatc aagtcttgaa gttaccccta ccacatgtta tcaaagagga 1380 caaatttgct tggaggactg atgaggagtt tgcacgagaa atgctcgcag gagttaaccc 1440 agtgatgatc aagcgtctga cgaatttccc ggcaaaaagt actctggatc caaatgtgta 1500 cggtgaccat accagcaaga tcaccgaagc tcacattaag cacaacatgg agggcctcac 1560 ggtgcaaaat gcactgaagg gcaacaggct tttcatccta gaccaccacg atcacttcat 1620 gccgttcctg gacaagatca acaagttgga cggtaacttc atatatgcga gcaggaccat 1680 tctgctcctg aaggacgatg gcaccctgaa gcccctggcg atcgagctga gcctgccgca 1740 ccccgatggc cagcagcacg gcgccgtcag caaggtgtac actccagcca acaccggcgt 1800 cgagagccaa atctggcagc tcgccaaggc ttacgcctcc gtcaacgact ctgcttggca 1860 ccagctgatc agccactggc tgaacactca cgccgtgatc gagccgttcg tgatcgcgac 1920 gaaccggcag ctcagcgtgg tgcaccccgt gcacaagctg ctgagcccgc actaccgcga 1980 cacgatgaac atcaacgctc tggcacggca gacactcatc aacgccgatg gcatcttcga 2040 gaagaccgtc ttcccaggca agtacgcgct cgagatgtcc tccgtcgtgt acaagaactg 2100 gaagttcacc gagcaggctc tccccgtcga tctcgtcaag agaggggtgg ccgtgccgga 2160 cccgacgagc ccgtacaacg tccggctgct gatcaaggac tacccgtacg ccgtggacgg 2220 gctggtgatc tggtgggcga tcgagcggtg ggtgggcgag tacctggcca tctactaccc 2280 caacgacggc gtgctccgcg gcgacgagga gctgcaggcg tggtggaagg aggtgcgcga 2340 ggtcgggcca tggcgacctc aaggaccagg actggtggcc caagatggac accgtccagg 2400 agctcacccg ggcgtgcacc atcatcatct ggatcgcgtc ggcgctgcac gcggcggtca 2460 acttcggcca gtacccgtac gcggggttcc tcccgaaccg gccgacggtg agccggcggc 2520 cgatgccgga gccgggcacc gaggagtacg cgaagctgga gcgcggcggt gacgaggccg 2580 acctggtgtt catccacaca atcaccagcc agttccagac catcctcggc atctcgctca 2640 tcgagatcct gtccaagcac tcctccgacg aggtctacct cggccaacgc gacacgccgg 2700 agtggacgtc ggacgccaag gcgctggacg cgttcaagag gttcggcagc cggctggtgg 2760 atatcgagaa ccggatcaag gacatgaacg gcaactcggc gctcaagaac cggaacgggc 2820 cggtgaagat gccgtacatg ctgctgtacc ccaacacgtc ggatgtcacc aaggagaagg 2880 gccaagggct caccgccatg ggcatcccca acagcatctc catctgagtc tcgcgtgcat 2940 tctttagatc gatatacgtg tgctattgct agtgttgcgc gtttgccgtc gtcgatttgt 3000 ttcattgttt gtatcagtgt gcattaccgt gattcttcgt agttcagggt ctcagggata 3060 agtcgttgca aatgtgagta accttgaggc atggataatt tcattaggaa ttattcacat 3120 ggaataatga aagttaataa aatcattttg ctttcagagt ttgtttc 3167 // |
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