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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK067372; SV 1; linear; mRNA; STD; PLN; 2486 BP.
XX
AC   AK067372;
XX
DT   19-JUL-2003 (Rel. 76, Created)
DT   14-DEC-2008 (Rel. 98, Last updated, Version 4)
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DE   Oryza sativa Japonica Group cDNA clone:J013106K01, full insert sequence.
XX
KW   CAP trapper; FLI_CDNA.
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OS   Oryza sativa Japonica Group
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-2486
RA   Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K.,
RA   Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K.,
RA   Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I.,
RA   Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y.,
RA   Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N.,
RA   Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N.,
RA   Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H.,
RA   Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M.,
RA   Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K.,
RA   Murakami K., Murata M., Nagata T., Nakamura M., Namiki T., Narikawa R.,
RA   Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M.,
RA   Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H.,
RA   Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K.,
RA   Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S.,
RA   Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A.,
RA   Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y.,
RA   Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A.,
RA   Yazaki J., Yokomizo S., Yoshimura A.;
RT   ;
RL   Submitted (05-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences,
RL   Department of Molecular Genetics, Head of Laboratory of Gene Expression;
RL   2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
XX
RN   [2]
RA   Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N.,
RA   Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T.,
RA   Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K., Shishiki T., Otomo Y.,
RA   Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y.,
RA   Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M.,
RA   Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R.,
RA   Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M.,
RA   Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K.,
RA   Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K.,
RA   Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N.,
RA   Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T.,
RA   Yoshino M., Hayashizaki Y.;
RT   "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from
RT   japonica Rice";
RL   Science 301:376-379(2003).
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CC   This clone is one of the 28K full-length cDNA clones from japonica
CC   rice.
CC   URL : http://cdna01.dna.affrc.go.jp/cDNA/
CC   NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
CC   Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
CC   Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
CC   Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
CC   and Yamamoto,M.
CC   FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
CC   Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
CC   Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
CC   Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
CC   Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
CC   Yoshimura,A., Matsubara,K. and Murakami,K.
CC   Genome Exploration Research Group in Riken Genomic Sciences Center
CC   and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
CC   Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
CC   Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
CC   Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
CC   Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
CC   Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
CC   Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
CC   Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
CC   Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
CC   Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
CC   Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
CC   Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
CC   Yasunishi,A. and Hayashizaki,Y.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2486
FT                   /organism="Oryza sativa Japonica Group"
FT                   /cultivar="Nipponbare"
FT                   /mol_type="mRNA"
FT                   /clone="J013106K01"
FT                   /db_xref="taxon:39947"
FT   CDS             256..1422
FT                   /note="(RAP Annotation release2) Glycosyl transferase,
FT                   family 17 protein"
FT                   /note="(Rice Genome Annotation Project)
FT                   acetylglucosaminyltransferase/ transferase, transferring
FT                   glycosyl groups, putative, expressed"
FT                   /note="mapping to R04-TIGRv4S1-000636R (Chr.4: short
FT                   arm=23673724, long arm=23677338, direction=reverse) for
FT                   TIGR Pseudomol ver4"
FT                   /db_xref="GOA:Q7XK38"
FT                   /db_xref="InterPro:IPR006813"
FT                   /db_xref="UniProtKB/TrEMBL:Q7XK38"
FT                   /protein_id="BAG90391.1"
FT                   /translation="MPETGPYGHKKTDGICDGVCGEPASKAVLTMSRLRCALRGFDFRA
FT                   LLALLIGVPILILMIYAHGQKVTYFLRPIWESPPKPFKTIPHYYHENVTMAKLCKLHGW
FT                   KVRETPRRVFDAVLFSNELDILEIRWNELSPYVSEFVLLESNSTFTGLKKPLHFKENRH
FT                   RFGFAESRLTYGMIGGRFVKGENPFVEESYQRVALDQLIKIAKIEDDDLLIMSDVDEIP
FT                   SGHTIDLLRWCDDIPEILHLQLRNYLYSFEFFLDDKSWRASIHRYRSGKTRYAHFRQTD
FT                   ELLADSGWHCSFCFRYISDFAFKMQAYSHVDRIRFKYFLNPERIQDVICRGADLFDMLP
FT                   EEYTFQEIIAKLGPIPSTFSAVHLPSYLLQNVDRYRYLLPGYCRRESG"
XX
SQ   Sequence 2486 BP; 572 A; 610 C; 605 G; 699 T; 0 other;
     ggctatttac acaactcgcc accaccgtaa cgggcaacgc ccagaagcgt ccgcctcccc        60
     ctccctccga gggcgagatc ggaacaaggc ccccacccaa ccaccgccgc cgccgccacc       120
     ggcgatcgcc ggcgaccccc gggccacggg aggcgccccg ccctcctcgc cattggagag       180
     gaccttctct cctgctcgga ttcgtttgct ctggtggtgg tggtggggct ttgctggcgc       240
     gaggccgcgc ctgccatgcc ggagaccggg ccctacggcc acaagaagac cgacggcatc       300
     tgcgacggcg tgtgcggcga gcctgcgtca aaggcagttc tgaccatgtc gaggctgaga       360
     tgtgcacttc ggggatttga tttcagagca ctattggccc tattgatagg agtgccaatt       420
     ctaattttaa tgatatatgc tcatggtcag aaggtcacat acttcctcag gccaatatgg       480
     gagtctcctc ccaagccctt caaaactatc cctcattact accatgagaa tgtcaccatg       540
     gcgaaactct gcaagttgca tgggtggaaa gtccgggaga ccccacgacg tgtcttcgat       600
     gctgtactat tcagcaatga gctcgatatt cttgaaatac gttggaatga actaagcccc       660
     tatgtctcag agtttgtgct gcttgagtcg aactcaacct tcactggatt gaaaaagccc       720
     ctgcacttca aggaaaatcg tcatcgattt ggatttgctg aatcacggct gacatatggt       780
     atgattgggg gaaggttcgt gaagggagaa aacccatttg ttgaggagtc atatcagagg       840
     gttgccctgg accagcttat taagattgca aaaatagaag atgatgacct gttgatcatg       900
     tcagatgttg atgaaatccc aagtggccac acaattgatc tcctgagatg gtgcgacgac       960
     attcctgaga tccttcatct tcagcttagg aattacctct actcatttga atttttcctg      1020
     gatgacaaaa gttggagggc atcgatacac aggtacaggt ctgggaagac aagatatgca      1080
     cacttccggc agacagatga gcttcttgct gattcagggt ggcactgcag tttttgcttt      1140
     cgctacatta gtgattttgc cttcaaaatg caagcttaca gccatgtcga tcggattaga      1200
     tttaagtact tcctgaaccc tgaaaggatt caagatgtta tatgcagagg ggcggatctt      1260
     tttgacatgc ttcctgaaga gtacacgttc caagagatca ttgccaagtt ggggccgatt      1320
     ccaagcacat tttctgctgt tcatcttcct agctatctgc tacagaatgt tgatcggtac      1380
     agataccttc tcccagggta ctgcaggaga gaaagtgggt agattttgat gatctacact      1440
     cttcaatctg atgtgcaggc ctgtcactgc catgttctcc acctccgaga ttggctggcc      1500
     gtgacggttg catctgatat gattggctaa cttagctgga tgattgcttg ggatgagtgg      1560
     ctatggatga tttcatcatc cttcactgtg caatctaaca ccggacgacc ctacaggcta      1620
     cagcatagtg tatgctcggt cgtggcatgg ttaccttccc agaggagctc attaccctgt      1680
     ggtagccacc acaagttcac ctgtcattca tattacttcc ctgattgata cataaactga      1740
     gaactgctgt agattgcaaa atcaagtgag atttcagatt tatatgctgt agaactagca      1800
     ttaccctgca gataatccac acatgctttt attctctctt tctttttcgc gttggtgttc      1860
     tgttcctttc tttgatggct gcatccaatt tctggttgac caaaaactct ggcttccgtt      1920
     gctccgtcgt tggaaattgc cgcatgattg cgtgagcact tcttctgttt cttcatccat      1980
     cattgacttg agcgcttgtc tggtatgtgt cctgtggtca atccgaggca atatcacaca      2040
     caagtacaca acccaatgcc caagttgagc taagttattc cttcttgtgc gtctaatcta      2100
     ccgtctcttg acctgttctc caagtggttt agcagctggt tggtagtgaa ttgctaggtt      2160
     caaacagctc gctgtctgca ggcccggcct ggctggatcg acaggtggat gcttctatta      2220
     tcggtgggca aggtatattg cgtatagaac tatagatagg cttggaggac ttgggcagtt      2280
     gggcgaagcg gtcagtgaaa cattctctga tcactaccct attattggta ctccgtactt      2340
     ggtatagcaa atcggtgttc tattgtgctc tggttgcctc aaatcaacaa gaggtttgag      2400
     atggatacta ctactactcg tgtagccagt tgttttttcc gttggccagc cacaaaatgg      2460
     ttatttgtcg ctgttcttcc tttccc                                           2486
//
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