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EBI DbfetchID AK065189; SV 1; linear; mRNA; STD; PLN; 1749 BP. XX AC AK065189; XX DT 19-JUL-2003 (Rel. 76, Created) DT 14-DEC-2008 (Rel. 98, Last updated, Version 4) XX DE Oryza sativa Japonica Group cDNA clone:J013002E07, full insert sequence. XX KW CAP trapper; FLI_CDNA. XX OS Oryza sativa Japonica Group OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; OC Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1749 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K., RA Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I., RA Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y., RA Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N., RA Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N., RA Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H., RA Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M., RA Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K., RA Murakami K., Murata M., Nagata T., Nakamura M., Namiki T., Narikawa R., RA Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M., RA Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H., RA Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K., RA Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S., RA Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A., RA Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y., RA Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A., RA Yazaki J., Yokomizo S., Yoshimura A.; RT ; RL Submitted (05-DEC-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, RL Department of Molecular Genetics, Head of Laboratory of Gene Expression; RL 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan XX RN [2] RA Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., RA Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., RA Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K., Shishiki T., Otomo Y., RA Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., RA Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., RA Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., RA Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., RA Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., RA Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., RA Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., RA Yoshino M., Hayashizaki Y.; RT "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from RT japonica Rice"; RL Science 301:376-379(2003). XX DR GOA; Q5VRH4. DR InterPro; IPR005708; Homogentis_dOase. DR InterPro; IPR011051; Cupin_RmlC_type. DR UniProtKB/Swiss-Prot; Q5VRH4; HGD_ORYSJ. XX CC This clone is one of the 28K full-length cDNA clones from japonica CC rice. CC URL : http://cdna01.dna.affrc.go.jp/cDNA/ CC NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., CC Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., CC Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., CC Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. CC and Yamamoto,M. CC FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., CC Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., CC Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., CC Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., CC Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., CC Yoshimura,A., Matsubara,K. and Murakami,K. CC Genome Exploration Research Group in Riken Genomic Sciences Center CC and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., CC Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., CC Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., CC Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., CC Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., CC Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., CC Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., CC Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., CC Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., CC Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., CC Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., CC Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., CC Yasunishi,A. and Hayashizaki,Y. XX FH Key Location/Qualifiers FH FT source 1..1749 FT /organism="Oryza sativa Japonica Group" FT /cultivar="Nipponbare" FT /mol_type="mRNA" FT /clone="J013002E07" FT /db_xref="taxon:39947" FT misc_feature 1..1749 FT /note="(RAP Annotation release2) Similar to Homogentisate FT 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) FT (Homogentisate oxygenase) (Homogentisic acid oxidase)" FT /note="(Rice Genome Annotation Project) homogentisate FT 1,2-dioxygenase, putative, expressed" FT /note="mapping to R06-TIGRv4S1-000006R (Chr.6: short FT arm=214143, long arm=217016, direction=reverse) for TIGR FT Pseudomol ver4" XX SQ Sequence 1749 BP; 389 A; 499 C; 440 G; 421 T; 0 other; gaggagagga gaagcctcct gaaactgaaa ggagacaagc agttgtgttg tccttctccc 60 tctcctccgg ccagcggcca tggccatggc aacggcaacc cccgcggcgc agaatgagca 120 gcaggagaag ggggggttgg agtacgtata tctgtcgggg ctgggcaaca gcttgtcgtc 180 ggaggcggtg gcggggacgc tcccgcgcgg gcagaacagc ccgctggtct gcccgctggg 240 actctacgcc gagcagctct ccggcacgcc cttcaccgcc ccgcgcgccc gcaacctccg 300 aacatggctg taccggatca agccttcggt gacccacgag cccttccacc cccgtcgccc 360 cgcccacccc cgcctcattg gggatttcga ccgcaccacc accgacaccg tcgccacgcc 420 cacccagctg cgctggcgcc ccgccgacgt gcccccccac catcctcccc tcgatttcat 480 cgatggcctc tacaccgtct gcggcgctgg cagctccttc ctgcgccacg gatacgccat 540 ccacatgtac gctgctaaca agtccatgga cggatgcgcc ttttgcaacg ctgacggcga 600 tttcctcatt gtcccccagc aaggaaagct gttgatcaca actgaatgtg ggaagctgct 660 agtcccacct ggtgaaattg ttgtcattcc ccagggtttt cgctttgctg ttgatttgcc 720 cgatggtcct tcacgtggct atgtttctga gattttcggt acccactttc agctccctga 780 tcttggcccg attggtgcaa atggcttggc ttcggcaagg gatttccttt ccccaacagc 840 atggtttgag caagtccacc gcccaggata cacaattgtg cagaaatatg gtggtgagct 900 attcactgcc actcaggact tttctccatt taatgtggta gcgtggcatg gaaattatgt 960 cccttacaag tacgacctga gtaaattctg tccatttaac actgttctat tcgatcatgc 1020 tgatccatca gtaaatacag tgctgactgc accaactgat aagcctggtg tcgcattgct 1080 tgattttgtg atattcccgc ctagatggtt ggtcgctgag aacacatttc gccctccata 1140 ctatcatcgc aattgcatga gtgaatttat gggattgatc tatggaatat acgaggccaa 1200 agctgatggt tttcttcctg gaggtgctag ccttcacagt tgcatgacac ctcatggccc 1260 agacaccaag acatacgagg caacaatcag ccgtcctgat gcaaatgagc catcaaggct 1320 aagcggcacg cttgcattcg tgttcgagtc tgcactcatc cccagggttt gccaatgggc 1380 cctcgattcc ccatcccggg atctcgatta ctaccagtgc tggattggat tgaaatccca 1440 cttctcacat gacaatggag gggcaaccag cgaagaacca tgcagaaagt agctttgatc 1500 agttttagta gcttatgatg ctgtgcttgt gtatattttg tgaggctgta actgaaccat 1560 tcaccagatc cgtgtaagta aagacaataa tgctcagcag cctgtactgt acaatcgtgg 1620 gtatagcatt atcagaagca agaatgtcaa tttcaataag aggttgccta cactgtaggc 1680 agattagtac aggcgtgttt gtaacaccat gaatgaatga atggatggat ggacaccgtg 1740 tgaggtacc 1749 // |
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