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EBI DbfetchID AK053638; SV 1; linear; mRNA; HTC; MUS; 2934 BP. XX AC AK053638; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched DE library, clone:E130116J10 product:SELENOPHOSPHATE SYNTHETASE , HUMAN DE SELENIUM DONOR PROTEIN homolog [Homo sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2934 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000148087. DR Ensembl-Gn; ENSMUSG00000026662; Mus_musculus. DR Ensembl-Tr; ENSMUST00000115019; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..2934 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="0 day neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="E130116J10" FT /tissue_type="eyeball" FT /db_xref="taxon:10090" FT CDS 414..1592 FT /codon_start=1 FT /transl_table=1 FT /note="SELENOPHOSPHATE SYNTHETASE , HUMAN SELENIUM DONOR FT PROTEIN homolog [Homo sapiens] (SPTR|Q9BVT4, evidence: FT FASTY, 99.5%ID, 100%length, match=1176)" FT /note="putative" FT /db_xref="GOA:Q8BH69" FT /db_xref="InterPro:IPR004536" FT /db_xref="MGI:1923580" FT /db_xref="UniProtKB/Swiss-Prot:Q8BH69" FT /protein_id="BAC35456.1" FT /translation="MSTRESFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL FT QENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIAC FT ANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSVTGGQ FT TVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWN FT KIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQ FT QRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEI FT KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS" XX SQ Sequence 2934 BP; 728 A; 683 C; 742 G; 781 T; 0 other; gagtgtcctg gcgccgagcc gcgggcctcc ccgcccccac tcggccctcg ggtccctccg 60 gtccccgccg gcgacggtct ccgcggcagc ggcgacgcgg ggcctgcggt gcagcatggc 120 cctgccggtg gcctgcccgc ggcagccgcg cggcgcggta caaagaacgc ggcccgcgcc 180 cgccgtgcct ttaaaggcgg cagcctgaga cttaaggtgt cccctgagtg gcatcctccg 240 cgcccggccc catggagggc gcggggtccc ggcgcgcacg ccgcggcgcc cgggcctgtg 300 agcacgcgcg gggcctgggg gctggcgggg aggtggatca caagtagaaa gcccagtgga 360 tctagagaga gggaggggag gggctgagct gtggagagtg cggccccaga accatgtcta 420 ctcgagagtc ctttaacccg gagacttatg aattggacaa gagcttccgg ctaaccaggt 480 ttactgaact gaaaggcaca ggctgcaaag tgccccaaga tgtcctacag aaactgctgg 540 aatctttaca agagaaccac ttccaagaag atgagcagtt tctgggagct gttatgccac 600 gacttggcat tgggatggat acttgcgtca ttcctttgag gcatggtggt ctttccttgg 660 ttcagaccac agattacatt tatcctatcg tcgacgaccc gtatatgatg ggcaggatag 720 catgtgccaa tgtcctcagt gacctttatg caatgggtgt cacggagtgt gacaatatgc 780 tgatgctcct tggagtcagt aataaaatga ctgaccggga gagggataaa gtgataccgc 840 taattataca gggttttaaa gatgcggcag aggaagcggg aacctctgta acaggcggcc 900 aaacggtatt aaacccctgg attgttctgg gaggagtcgc cacaacggtc tgccagccca 960 atgaatttat catgccagat aatgcagtac ctggggatgt gctggtattg acaaagcccc 1020 tggggacaca ggttgcagtt gctgtgcacc agtggctgga tattcccgaa aaatggaata 1080 aaattaagct agtggtcacc caagaagacg tagagttggc ataccaagag gcaatgatga 1140 acatggcccg gctcaacagg acagctgcag gcctcatgca cacgttcaat gctcatgcag 1200 ccactgacat caccggcttc gggattctgg gccacgcgca gaacctggcc aagcaacaga 1260 ggaacgaagt gtccttcgtg attcacaacc ttcctgtgct ggcgaagatg gccgctgtga 1320 gcaaagcctg cggaaacatg ttcggcctaa tgcatgggac ctgcccagag acgtcaggag 1380 gcctgctaat ctgtctaccc cgtgagcaag cagctcggtt ctgtgcagag atcaagtccc 1440 ccaaatacgg cgaagggcac caagcatgga ttattgggat agtggagaag ggcaaccgca 1500 cagccaggat catcgacaag cctcggatta ttgaagtcgc acctcaagta gccacacaaa 1560 acgtgaaccc cacacctggt gccacctcct aatccagaca gagctatttg attttgtttt 1620 taaatagatc tatttccttt atcatcactt caattaaaga ctctaagaac aacaaaatct 1680 cattgtgtct acacatctgg tgaccctagg tcggtttatg agtggatgca attaataaaa 1740 tgaaatccat ggccgccttt tcctgttaca ttaactgaag atgcacccga cctccaggca 1800 gcttctgagt tgagagtgat cctgttatcc aatcctgttg attcattttg aatctttagc 1860 tgtgtgtctc ttgccgcata ggcgctctct aaaggtgctt ttctgccact cgggcattgc 1920 tgagaggagt gccactagcc ttctgtgtct tctcatttct gcctctcatc tcagtctgat 1980 ctgttgtcaa gtgtctcagt tgacattcta gaaagacaga atggtaagtg acatgatggt 2040 ctccccgtag tcagagggtt gcatggctcc ttcgagtgtt tgatttgtaa agttgagtcg 2100 aataactcga gggacttctt atccagtagc tctctcagtt cagtatggca ggtgctttgc 2160 ttggcatgga atgcacttgg aatacaaaaa aggaatgttc ttttagaaca aacaaagctt 2220 tcctgagact tgcagtaata ccattaatgg tttttactaa tagggaaaag gatacttttt 2280 gcagtgttct ttagatgttc tatagtgcga cgaggaactg ccttccgatg cgggggttca 2340 tgtataatac tcatttataa ttcaatatat aatttacttc gcaaataatt tttaaatata 2400 atcaatacta aggactgttg tgtggatggt agtgttgaat acattttata ttttgtattg 2460 tgattccagg cctcttgttt aaaatcagca gctctttagc ccaagtctta gcacatcttg 2520 tcttggcaca tcttgtcttt gtgcacgaat tctgtgattt gtgttaaaaa cctgcattgt 2580 caacattgca gctccaacat aaaagttgtt attcaaataa atatttaatt tttttaattg 2640 ctcttgtata atcagatgcc ctttttagta ttattttaga agcatttggg aggattttgc 2700 ctaaaataca atttattggg ggagactaga ttttagtttt ataaactttt aagtctttca 2760 tgggacctat attttcttga attaaatttt gtagttctag aacaaatagg caatctacaa 2820 aggtgttatc tgtgtttctt aaaaccaggc ttccttatct tccttatctg ttaagcagct 2880 gggggattcc cgtctttaag cacaagggca ctgggtcctc aaacgcctga cttc 2934 // |
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