 |
|
EBI DbfetchID AK049271; SV 1; linear; mRNA; HTC; MUS; 4616 BP. XX AC AK049271; XX DT 18-DEC-2002 (Rel. 74, Created) DT 20-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus ES cells cDNA, RIKEN full-length enriched library, DE clone:C330018I01 product:NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 2 DE (NLI-INTERACTING FACTOR 2) (PROTEIN OS-4) homolog [Homo sapiens], full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-4616 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..4616 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="C330018I01" FT /cell_type="ES cells" FT /db_xref="taxon:10090" FT CDS 322..1134 FT /codon_start=1 FT /transl_table=1 FT /note="NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 2 FT (NLI-INTERACTING FACTOR 2) (PROTEIN OS-4) homolog [Homo FT sapiens] (SWISSPROT|O14595, evidence: FASTY, 94.3%ID, FT 100%length, match=843)" FT /note="putative" FT /db_xref="GOA:Q8BX07" FT /db_xref="InterPro:IPR004274" FT /db_xref="InterPro:IPR011948" FT /db_xref="MGI:1098748" FT /db_xref="UniProtKB/Swiss-Prot:Q8BX07" FT /protein_id="BAC33649.1" FT /translation="MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRSIFKALLCCF FT HTQHVVQSSSSTELTHKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEQDQGRICVV FT IDLDETLVHSSFKPINNADFIVPVEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTA FT SLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKDLSRLGRDLRKTVILDNSPASY FT IFHPENAVPVQSWFDDMADTELLNLIPVFEELSGTDDVYTSLGQLRAP" FT polyA_signal 4594..4599 FT /note="putative" FT polyA_site 4616 FT /note="putative" XX SQ Sequence 4616 BP; 935 A; 1321 C; 1213 G; 1147 T; 0 other; ggccccgtgt cccatttcct cctcttgttt tcgctccgga ttctccatgt tggacccaaa 60 ctgaggagcc cggagctgcc accgggggat cggggctggg ggcaccgggg aagccgccgc 120 ctggcccgcc cgccctctgt gcaggccgcc tcccttcccg gcccggggag gaaacgcgag 180 ggggatgtga acagctgcgg gagtcggagt ctcgggagcc ggagcccgac gggcccccgc 240 ccaggccccc cagcccagcc cgcctgcgcg cccgcccgcg cgtcctcccg cccagccagc 300 ccgggcccgc gggattgtta gatggaacac ggctccatca tcacccaggc gcggagggaa 360 gacgccctgg tgctcaccaa gcaaggccta gtctccaagt cctcgcctaa gaaaccccgt 420 ggccgcagca tcttcaaggc cctcttgtgc tgtttccaca cacagcatgt tgtccagtcc 480 agctcttcca ctgagctcac acacaaggag gaggccaaca ccatcgccaa gtccgatctc 540 ctccagtgtc tccagtacca gttttatcag atccctggga cctgcctgct ccccgaggtg 600 acagagcaag atcaaggcag gatctgcgtg gtcattgacc tggatgagac ccttgtgcac 660 agttccttta agccgatcaa caatgctgac ttcatagtgc ctgtagagat tgaggggacc 720 acgcaccagg tatatgtgct caagaggcct tacgtcgatg agttcctgag acggatgggg 780 gagctcttcg aatgtgttct cttcactgcc agcttggcca agtatgctga ccctgtgact 840 gatctcctgg accggtgcgg ggtgttccgg gcccgcctgt tccgagaggc ttgtgtgttc 900 caccagggct gctatgtcaa ggacctcagc cgcctgggaa gggacctgag gaaaactgtc 960 atcctggaca actcccctgc atcttacatc ttccacccag aaaatgcagt gcctgtgcag 1020 tcctggtttg atgacatggc agatacagag ttgctgaacc tgattccagt cttcgaggag 1080 ctaagtggaa ctgatgatgt ctacaccagc cttgggcagc tgcgggcccc ttagccttcc 1140 tgctccaaga aacggccatc ccaacagggg actctgctac actgtgcctt tgtggtcagc 1200 ctcactgacg gggtctgcaa gtagccaggg cgtgtgggac aaaagcaggt cacacgcaga 1260 gcaggaaatc agaccaagac ccagagctct ctgcaccccg tgctcagttc ccaggtggtt 1320 gtgtgggtgt gtgtgcgtgc atgtgcccgt ccggtaaact atggtcctgg gtgcccagtt 1380 gtgcagtagg gggagaagct gaaagataag gactcaaccc aagtcatttg tcttctttcc 1440 tgctatgctg tgagctactg agctttacag ccatgaaaac tattgtaggc tccctcgcca 1500 aaccatggct ttccctcagc atcaagacct gtgccaagga gaagggagag gccggaggct 1560 gctttggatg cccagacaca catctttcag aaaacacaga aacctagcca gcagctgcag 1620 acatgtttgg gaatatgaga gcatgttcgc agacccacca ggttctgtgt cctatgggct 1680 acacctggct ccagcaagaa tgcctgccat gggcacttct ctgtacccgg gctccagtgc 1740 caggccagcc tctcactccc aagccatagt cctactccca tgggaaagga ggtcttctct 1800 ctgccctgga ggaggacata tagctgattt ctgttctttt aactcttaaa aatctctttc 1860 taaacttgga gtggtttata ttcgcccgag ctccagtcct gggcctgagg tttgtgtggg 1920 aagcgctggg gtacaaagaa aatgcaaatg ttcaatgcaa gatgtctgtc tccttgcgtg 1980 tagatcccaa aagtgctctt caggggttct gtgctagctg atgcaaggac attagctcca 2040 aaggctgggg agggcttggc tctccctctg tgtcttcctg gtgtcccgcc ctggccagct 2100 ctcgtctgct ctcgccttta tccttctcgg ctgctgctct tcctctccag agccttggga 2160 gaaggacttt ccccggttgt acttaattga ttggttgtcc caagtgttgc tcttacttga 2220 tttgccaaat gcctcctgct tctcgttata ggactgagtg aggtcctcat agctctgtgc 2280 tctgggcagc tctgagctct cagccctgtt gctttcaatg tcagtcacag agtggaagtt 2340 tccccaaagt ggaaagctac cattgggaac acaaggggcc cctgaggggc ctccacctca 2400 ctgccttaag tgagtcccgc ccactccctg cctccctccg aggtgggcgg gagttcctac 2460 cccatctctg cttcccctgg aggccggcca gcgtttgtgg gttggttcag gtgtggtacc 2520 tcccactcag gagtcaatat tttcaaattt ttctagtttc cacacacgag gtcctgcctg 2580 gggtttgaga aagcctggtg gaggagtgtg gtggtgtgag tggagactgg ctggcattcc 2640 tccagcactc tgcagacttc ttcctgggcc cgaggctatg gagccttggc tttcacttct 2700 gtgacaaaca catgccattt ccccagcctc atttgctggt gtctgtaggg tcctcccaag 2760 gtgagctgag ggctgcaggt gctagccagg aacatgggag cttgactgtg gcttcaggtc 2820 cagaccctga tctcactggc atcccaatac tgcaggaggg gtcttctcac aaagctctga 2880 gggctggtct tgactaagca ataagagcct cagagttgat tgaattttaa ggtccctttc 2940 tggcttcttg gttctccatg tgaccaaagc ccagtgtggc ttcatgggag ccctgttact 3000 tctccatgaa accccagctc tctaggcctg actgccacca gagtcctctt accacctgca 3060 gtctgccaca aagatgccat atcaactcct ctcttcccaa aactaaacag gatctatcat 3120 ggtggcacgg agtcagctag atgttgtctc ttgctatccc tgtgctagtt ccatgtttta 3180 gaagcaaagt gatactgggg aggagaggag ggcaagtgag aggagccagt gcctcctgaa 3240 gcccttgctc cactgccacc agcccgcctg ccccagtgca gactggtctt caggagtcag 3300 tagaccaccg gaccaggtgt cagcatccac tccaagccat gctaggaatc tgccccctgc 3360 cgggttcagc tctttaaggt gcctcttcag ggacacagtg tgtgtctgat tgggcttcgc 3420 atcaaaagcc tgacgttcct gtccctctta tagggggagc tttggacaca ggaccagttt 3480 gataaagggc caggtaaggg tttccactct gcacattgta gaggggacac cgaaggccca 3540 tgggtcccta attaaagaag ttgagtgaat ttgccttcgt tcaaccaggg acctatctca 3600 ctccctccca aagatttttg tataattgta taacccccct ccccctgtta acagtggctc 3660 agaaaagctt tgtactaaaa gcatgggacc ctcacagcaa ccattcctgg gagatgggtc 3720 ccttataggt ccatgacctg ctctgttcag aggcctcttg gcagtgtggc ctgtttgtgc 3780 tgtcctgcat ccagtgtgtt ggcctggcta agtgaaaacg gtgagctgtt tcccctttgg 3840 gctacttaac cacggctact ccttttttaa aaatgtccta gttctcccct acacacacac 3900 acacacacac ggtttgatga atttccaaac cacggctact ccttttttaa aaacgggttt 3960 gaactcctgt ttagccaaga gtgatcttga gctggtctcc tgcctccacc ccctgagtgc 4020 tggggttaca ggtgatagct ggtctcctgc ctccacctcc tgagtgctgg ggttacaggt 4080 gatcgctggt ctcctgcctc cacctcctga gtgctggggt tacaggtgat cgctggtctc 4140 ctgcctccac cccctgagtg ctggggttac aggtgtgatc accttgctgg cttgtgaggt 4200 gctggggaca acccagggct tcgtgcatgt caggcacaca ctcccaacta agctacatcc 4260 ccagtccctc tttctagaaa acagataagt ccatgttcag gggagaagag gtcacaggtc 4320 aggccagctg ccccatcctt tagttcgggg ttagctccca gaactgccct gcaccataag 4380 ctggtgattc tccatgcctg tccttacccc ggatctggct attcccgtga tgccatttgg 4440 aggggagagg tctgcttccc actgtgacca ggctatggga tccttggcca ccttgcttca 4500 tgatttgata catttgttgt attcaaaaac ttgaactgta ggatgccatt aagagtctgt 4560 ttatattttt ggaatatttg tattacaatt gttaataaag gctggtttaa aaacct 4616 // |
|