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EBI DbfetchID AK046033; SV 1; linear; mRNA; HTC; MUS; 1923 BP. XX AC AK046033; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length DE enriched library, clone:B230337A01 product:hypothetical NAD(P)-binding DE Rossmann-fold domains structure containing protein, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1923 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000181292. DR Ensembl-Gn; ENSMUSG00000038936; Mus_musculus. DR Ensembl-Tr; ENSMUST00000111126; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1923 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="B230337A01" FT /tissue_type="corpora quadrigemina" FT /db_xref="taxon:10090" FT CDS 127..1416 FT /codon_start=1 FT /transl_table=1 FT /note="hypothetical NAD(P)-binding Rossmann-fold domains FT structure containing protein (SCOP|51735, evidence: SCOP)" FT /note="putative" FT /db_xref="GOA:Q8R127" FT /db_xref="InterPro:IPR005097" FT /db_xref="MGI:1924486" FT /db_xref="UniProtKB/Swiss-Prot:Q8R127" FT /protein_id="BAC32578.1" FT /translation="MATEQRPFHLVVFGASGFTGQFVTEEVAREQIASEQSSRLPWAVA FT GRSKEKLQQVLEKAAQKLGRPSLSSEVGVIICDISNPASLDEMAKQAKLVLNCVGPYRF FT YGEPVVKACIENGTSCIDICGEPQFLELMHAKYHEKAAEKGVYIIGSSGFDSIPADLGV FT LYTRNQMNGTLTAVESFLTINTGPEGLCIHDGTWKSAIYGFGDKGSLRKLRSVSCLKPV FT PIVGTKLKRRWPVSYCRELNSYSIPFLGSDISVVKRTQRYLHENLEDSPVQYAAYVTVG FT GITSVIKLMFAGLFFLFFVKFSIGRQLLIKFPWLFSFGYFSKQGPTQKQMDETSFTMTF FT FGQGYSHGTCVEKNKPNIRICTQVKGPEAGYVATPIAMVQAAMTFLSDASDLPKGGGVF FT TPGAAFSRTKLIDRLNKHGIEFSVISSSEV" FT polyA_signal 1905..1910 FT /note="putative" FT polyA_site 1923 FT /note="putative" XX SQ Sequence 1923 BP; 495 A; 412 C; 488 G; 528 T; 0 other; ggctgtagcc gcgccgacgg cggccaggac agcggcggtt gctgcgcccg gtactggggt 60 cccggcctga ggcgcaggcg cggtggactc agcccgcccc gggctgcagc tcgctgtgga 120 ctcgtcatgg cgacggagca gaggcctttc cacctggtgg tgttcggcgc ctctggcttc 180 accggccagt tcgtgacgga ggaggtggcc cgggagcaga tagcctcgga gcagagctcc 240 cgcctgccct gggccgtggc gggtcgctcc aaggagaagc tgcagcaagt gctggagaag 300 gctgcccaga aactgggaag accatcacta tcatctgaag ttggagtcat aatctgtgat 360 atcagtaatc cagcctcact tgatgaaatg gctaaacagg caaagcttgt cctcaactgc 420 gtaggaccgt atcgatttta tggagaacct gtagtaaaag catgtattga aaatggaaca 480 agttgtattg acatctgtgg ggaacctcag tttctggaac taatgcatgc gaagtatcat 540 gagaaagctg cagagaaggg ggtttatatc attggaagca gtggctttga ctccatccca 600 gcagatctag gagtgctata caccaggaac cagatgaacg gtactttgac tgctgtagaa 660 agcttcctga caataaatac aggacctgag gggttgtgta ttcatgatgg aacctggaag 720 tcggcaattt atggttttgg cgataagggt agtttaagaa aactacggag tgtatcatgt 780 ctgaaacctg tcccaattgt tggtacaaag ttgaaaagaa ggtggccagt cagctattgt 840 agagagctga actcgtattc cattcctttt ttgggatctg atatatctgt tgtgaaaagg 900 actcagcgtt acttacatga aaatttagag gactcaccag ttcagtatgc tgcttatgtg 960 acggtgggag gcatcacctc tgtgattaag ctgatgtttg caggactgtt ctttttattc 1020 tttgtgaagt ttagcattgg aagacaactt ctcataaaat tcccatggct cttttccttt 1080 ggctattttt caaaacaagg tccaacacaa aaacagatgg atgagacatc atttacaatg 1140 acattctttg gtcaaggata cagccatggc acttgtgttg aaaagaacaa accaaatatc 1200 cgaatctgca ctcaagtgaa gggaccagag gctggctacg tggctactcc catagccatg 1260 gttcaggctg ccatgacttt tctgagtgac gcctctgacc ttccaaaagg gggcggtgtc 1320 tttacacctg gagcagcttt ctccagaaca aagttgattg acagactcaa caaacatggc 1380 attgaattta gtgtcattag cagctccgaa gtctaaacgt ttgaagacta accgaatcat 1440 aaaatgcaca aaccgcgtct gtatttgata tgtgaaattc ttctataagc ctatctgact 1500 gtatgtggac tgtcaagtat aaaatatctg tacattaaaa gcaggaaatt atactatctt 1560 atcctaaact tcatatctca gctgttttta tgattttatt gcttgtgaga ggaaactaac 1620 attctcctta cgtttttatt gacaagtgaa ctggaaggtc agatggtgaa gagagcccct 1680 gttggtgttg ctgacagcat tccttagtga cggagcgtgg ctgctgttag gctgtggcag 1740 tagagtctgc cttccctgcc ctggtgttgt ggaatctcac cctcctctaa gttcctctgc 1800 gtagcatgtg agcgtttgct aagtgaaact gtacttctac ttcagtctgc tttctcaccc 1860 atctactcca tggactgatc ttggattgtt taactcagtt gaataataaa gggttattta 1920 ttg 1923 // |
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