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EBI DbfetchID AK044971; SV 1; linear; mRNA; HTC; MUS; 3193 BP. XX AC AK044971; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length DE enriched library, clone:B130016N13 product:SELENOPHOSPHATE SYNTHETASE , DE HUMAN SELENIUM DONOR PROTEIN homolog [Homo sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-3193 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000148086. DR Ensembl-Gn; ENSMUSG00000026662; Mus_musculus. DR Ensembl-Tr; ENSMUST00000115019; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..3193 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="9.5 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="B130016N13" FT /tissue_type="parthenogenote" FT /db_xref="taxon:10090" FT CDS 316..1494 FT /codon_start=1 FT /transl_table=1 FT /note="SELENOPHOSPHATE SYNTHETASE , HUMAN SELENIUM DONOR FT PROTEIN homolog [Homo sapiens] (SPTR|Q9BVT4, evidence: FT FASTY, 99.5%ID, 100%length, match=1176)" FT /note="putative" FT /db_xref="GOA:Q8BH69" FT /db_xref="InterPro:IPR004536" FT /db_xref="MGI:1923580" FT /db_xref="UniProtKB/Swiss-Prot:Q8BH69" FT /protein_id="BAC32163.1" FT /translation="MSTRESFNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL FT QENHFQEDEQFLGAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIAC FT ANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSVTGGQ FT TVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWN FT KIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQ FT QRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEI FT KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS" XX SQ Sequence 3193 BP; 839 A; 724 C; 781 G; 849 T; 0 other; ggcgcccggc cggcgggagc gcggcggccc ggttcccgga gggccgcgcc cagcctaggc 60 cgagctccac gcggcgtccg agcgcccggc ggtgccgccg ccaccgggag cagcattttt 120 tttttttttt ttttttaaat tcaggcgacg cttaagggag cccagcgcgc ccggtgcatt 180 gtgggagcgc cgcggcccgt tttcgggagg aggcggaggg cgcaaagcga gccggtggat 240 cacaagtaga aagcccagtg gatctagaga gagggagggg aggggctgag ctgtggagag 300 tgcggcccca gaaccatgtc tactcgagag tcctttaacc cggagactta tgaattggac 360 aagagcttcc ggctaaccag gtttactgaa ctgaaaggca caggctgcaa agtgccccaa 420 gatgtcctac agaaactgct ggaatcttta caagagaacc acttccaaga agatgagcag 480 tttctgggag ctgttatgcc acgacttggc attgggatgg atacttgcgt cattcctttg 540 aggcatggtg gtctttcctt ggttcagacc acagattaca tttatcctat cgtcgacgac 600 ccgtatatga tgggcaggat agcatgtgcc aatgtcctca gtgaccttta tgcaatgggt 660 gtcacggagt gtgacaatat gctgatgctc cttggagtca gtaataaaat gactgaccgg 720 gagagggata aagtgatacc gctaattata cagggtttta aagatgcggc agaggaagcg 780 ggaacctctg taacaggcgg ccaaacggta ttaaacccct ggattgttct gggaggagtc 840 gccacaacgg tctgccagcc caatgaattt atcatgccag ataatgcagt acctggggat 900 gtgctggtat tgacaaagcc cctggggaca caggttgcag ttgctgtgca ccagtggctg 960 gatattcccg aaaaatggaa taaaattaag ctagtggtca cccaagaaga cgtagagttg 1020 gcataccaag aggcaatgat gaacatggcc cggctcaaca ggacagctgc aggcctcatg 1080 cacacgttca atgctcatgc agccactgac atcaccggct tcgggattct gggccacgcg 1140 cagaacctgg ccaagcaaca gaggaacgaa gtgtccttcg tgattcacaa ccttcctgtg 1200 ctggcgaaga tggccgctgt gagcaaagcc tgcggaaaca tgttcggcct aatgcatggg 1260 acctgcccag agacgtcagg aggcctgcta atctgtctac cccgtgagca agcagctcgg 1320 ttctgtgcag agatcaagtc ccccaaatac ggcgaagggc accaagcatg gattattggg 1380 atagtggaga agggcaaccg cacagccagg atcatcgaca agcctcggat tattgaagtc 1440 gcacctcaag tagccacaca aaacgtgaac cccacacctg gtgccacctc ctaatccaga 1500 cagagctatt tgattttgtt tttaaataga tctatttcct ttatcatcac ttcaattaaa 1560 gactctaaga acaacaaaat ctcattgtgt ctacacatct ggtgacccta ggtcggttta 1620 tgagtggatg caattaataa aatgaaatcc atggccgcct tttcctgtta cattaactga 1680 agatgcaccc gacctccagg cagcttctga gttgagagtg atcctgttat ccaatcctgt 1740 tgattcattt tgaatcttta gctgtgtgtc tcttgccgca taggcgctct ctaaaggtgc 1800 ttttctgcca ctcgggcatt gctgagagga gtgccactag ccttctgtgt cttctcattt 1860 ctgcctctca tctcagtctg atctgttgtc aagtgtctca gttgacattc tagaaagaca 1920 gaatggtaag tgacatgatg gtctccccgt agtcagaggg ttgcatggct ccttcgagtg 1980 tttgatttgt aaagttgagt cgaataactc gagggacttc ttatccagta gctctctcag 2040 ttcagtatgg caggtgcttt gcttggcatg gaatgcactt ggaatacaaa aaaggaatgt 2100 tcttttagaa caaacaaagc tttcctgaga cttgcagtaa taccattaat ggtttttact 2160 aatagggaaa aggatacttt ttgcagtgtt ctttagatgt tctatagtgc gacgaggaac 2220 tgccttccga tgcgggggtt catgtataat actcatttat aattcaatat ataatttact 2280 tcgcaaataa tttttaaata taatcaatac taaggactgt tgtgtggatg gtagtgttga 2340 atacatttta tattttgtat tgtgattcca ggcctcttgt ttaaaatcag cagctcttta 2400 gcccaagtct tagcacatct tgtcttggca catcttgtct ttgtgcacga attctgtgat 2460 ttgtgttaaa aacctgcatt gtcaacattg cagctccaac ataaaagttg ttattcaaat 2520 aaatatttaa tttttttaat tgctcttgta taatcagatg ccctttttag tattatttta 2580 gaagcatttg ggaggatttt gcctaaaata caatttattg ggggagacta gattttagtt 2640 ttataaactt ttaagtcttt catgggacct atattttctt gaattaaatt ttgtagttct 2700 agaacaaata ggcaatctac aaaggtgtta tctgtgtttc ttaaaaccag gcttccttat 2760 cttccttatc tgttaagcag ctgggggatt cccgtcttta agcacaaggg cactgggtcc 2820 tcaaacgcct gacttcaaaa gagaaaaagc accaagtctt caggtttcac agggcttcct 2880 actaacagga caggccccaa agctgagctc tgcaaactca cccaacctca ctcctcaaca 2940 cggaacacca gaaaaccgcc actggaccag cggaactgcg gaaggaagag gctgccacgt 3000 gcttgtgtcc ccagaatctc ctgtaaatgc acctcttact ggaactgaag ccaccagagt 3060 ctggccccag cagaggaagc tgtcacagaa ggacactaat tggacactat ataggaatct 3120 ataagatgtt ggtccttgaa agtatgcacc agtggtctgc aaaataaaac atgttggaac 3180 cctctgagtg cag 3193 // |
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