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EBI DbfetchID AK042919; SV 1; linear; mRNA; HTC; MUS; 1810 BP. XX AC AK042919; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched DE library, clone:A730039H11 product:hypothetical NAD(P)-binding Rossmann-fold DE domains structure containing protein, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1810 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000181292. DR Ensembl-Gn; ENSMUSG00000038936; Mus_musculus. DR Ensembl-Tr; ENSMUST00000040538; Mus_musculus. DR Ensembl-Tr; ENSMUST00000097455; Mus_musculus. DR Ensembl-Tr; ENSMUST00000111126; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1810 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="7 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="A730039H11" FT /tissue_type="cerebellum" FT /db_xref="taxon:10090" FT CDS 14..1303 FT /codon_start=1 FT /transl_table=1 FT /note="hypothetical NAD(P)-binding Rossmann-fold domains FT structure containing protein (SCOP|51735, evidence: SCOP)" FT /note="putative" FT /db_xref="GOA:Q8R127" FT /db_xref="InterPro:IPR005097" FT /db_xref="InterPro:IPR016040" FT /db_xref="MGI:1924486" FT /db_xref="UniProtKB/Swiss-Prot:Q8R127" FT /protein_id="BAC31405.1" FT /translation="MATEQRPFHLVVFGASGFTGQFVTEEVAREQIASEQSSRLPWAVA FT GRSKEKLQQVLEKAAQKLGRPSLSSEVGVIICDISNPASLDEMAKQAKLVLNCVGPYRF FT YGEPVVKACIENGTSCIDICGEPQFLELMHAKYHEKAAEKGVYIIGSSGFDSIPADLGV FT LYTRNQMNGTLTAVESFLTINTGPEGLCIHDGTWKSAIYGFGDKGSLRKLRSVSCLKPV FT PIVGTKLKRRWPVSYCRELNSYSIPFLGSDISVVKRTQRYLHENLEDSPVQYAAYVTVG FT GITSVIKLMFAGLFFLFFVKFSIGRQLLIKFPWLFSFGYFSKQGPTQKQMDETSFTMTF FT FGQGYSHGTCVEKNKPNIRICTQVKGPEAGYVATPIAMVQAAMTFLSDASDLPKGGGVF FT TPGAAFSRTKLIDRLNKHGIEFSVISSSEV" FT polyA_signal 1792..1797 FT /note="putative" FT polyA_site 1810 FT /note="putative" XX SQ Sequence 1810 BP; 484 A; 370 C; 442 G; 514 T; 0 other; gggtggactc gtcatggcga cggagcagag gcctttccac ctggtggtgt tcggcgcctc 60 tggcttcacc ggccagttcg tgacggagga ggtggcccgg gagcagatag cctcggagca 120 gagctcccgc ctgccctggg ccgtggcggg tcgctccaag gagaagctgc agcaagtgct 180 ggagaaggct gcccagaaac tgggaagacc atcactatca tctgaagttg gagtcataat 240 ctgtgatatc agtaatccag cctcacttga tgaaatggct aaacaggcaa agcttgtcct 300 caactgcgta ggaccgtatc gattttatgg agaacctgta gtaaaagcat gtattgaaaa 360 tggaacaagt tgtattgaca tctgtgggga acctcagttt ctggaactaa tgcatgcgaa 420 gtatcatgag aaagctgcag agaagggggt ttatatcatt ggaagcagtg gctttgactc 480 catcccagca gatctaggag tgctatacac caggaaccag atgaacggta ctttgactgc 540 tgtagaaagc ttcctgacaa taaatacagg acctgagggg ttgtgtattc atgatggaac 600 ctggaagtcg gcaatttatg gttttggcga taagggtagt ttaagaaaac tacggagtgt 660 atcatgtctg aaacctgtcc caattgttgg tacaaagttg aaaagaaggt ggccagtcag 720 ctattgtaga gagctgaact cgtattccat tccttttttg ggatctgata tatctgttgt 780 gaaaaggact cagcgttact tacatgaaaa tttagaggac tcaccagttc agtatgctgc 840 ttatgtgacg gtgggaggca tcacctctgt gattaagctg atgtttgcag gactgttctt 900 tttattcttt gtgaagttta gcattggaag acaacttctc ataaaattcc catggctctt 960 ttcctttggc tatttttcaa aacaaggtcc aacacaaaaa cagatggatg agacatcatt 1020 tacaatgaca ttctttggtc aaggatacag ccatggcact tgtgttgaaa agaacaaacc 1080 aaatatccga atctgcactc aagtgaaggg accagaggct ggctacgtgg ctactcccat 1140 agccatggtt caggctgcca tgacttttct gagtgacgcc tctgaccttc caaaaggggg 1200 cggtgtcttt acacctggag cagctttctc cagaacaaag ttgattgaca gactcaacaa 1260 acatggcatt gaatttagtg tcattagcag ctccgaagtc taaacgtttg aagactaacc 1320 gaatcataaa atgcacaaac cgcgtctgta tttgatatgt gaaattcttc tataagccta 1380 tctgactgta tgtggactgt caagtataaa atatctgtac attaaaagca ggaaattata 1440 ctatcttatc ctaaacttca tatctcagct gtttttatga ttttattgct tgtgagagga 1500 aactaacatt ctccttacgt ttttattgac aagtgaactg gaaggtcaga tggtgaagag 1560 agcccctgtt ggtgttgctg acagcattcc ttagtgacgg agcgtggctg ctgttaggct 1620 gtggcagtag agtctgcctt ccctgccctg gtgttgtgga atctcaccct cctctaagtt 1680 cctctgcgta gcatgtgagc gtttgctaag tgaaactgta cttctacttc agtctgcttt 1740 ctcacccatc tactccatgg actgatcttg gattgtttaa ctcagttgaa taataaaggg 1800 ttatttattg 1810 // |
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