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EBI DbfetchID AK037507; SV 1; linear; mRNA; HTC; MUS; 3206 BP. XX AC AK037507; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched DE library, clone:A130022J15 product:Hypothetical endoplasmic reticulum DE targeting sequence containing protein (Similar to expressed sequence DE AW214473), full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-3206 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000176515. DR Ensembl-Gn; ENSMUSG00000035245; Mus_musculus. DR Ensembl-Tr; ENSMUST00000113387; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..3206 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="16 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="A130022J15" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 507..2090 FT /codon_start=1 FT /transl_table=1 FT /note="Hypothetical endoplasmic reticulum targeting FT sequence containing protein (Similar to expressed sequence FT AW214473) (UniProt|Q8BYW9, evidence: FASTY, 100%ID, FT 100%length, match=1581)" FT /note="putative" FT /db_xref="GOA:Q8BYW9" FT /db_xref="InterPro:IPR007657" FT /db_xref="MGI:2141669" FT /db_xref="UniProtKB/Swiss-Prot:Q8BYW9" FT /protein_id="BAC29821.1" FT /translation="MLMLLVFGVLLHEVPLSGQDKAHSEADDAPGKALYDYSSLRLPAE FT HIPFFLHNNRHVASVCREDSHCPYKKHLENLNYCWGYEKSCAPEFRFGSPVCSYVDLGW FT TDTLESAQDMFWRQADFGYARERLGEIRTICQPERASDSSLVCSRYLQYCRATGLYLDL FT RNIKRNHDRFKEDFLQGGEIGGYCKLDSHALVSEGQRKSPLQSWFAELQGYTQLNFRPI FT EDAKCDIVVEKPTYFMKLDAGINMYHHFCDFLNLYLTQHVNNSFSTDVYIVMWDTSTYG FT YGDLFSDTWKAFTDYDVIHLKTYDSKKVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTG FT LFRAFSQHVLHRLNITQEGPKDGKVRVTILARSTEYRKILNQDELVNALKTVSTFEVRV FT VDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLA FT RLRGIHYITWRKPSKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAAEHVLQHPQ FT WPFKKKHDEL" XX SQ Sequence 3206 BP; 847 A; 767 C; 727 G; 865 T; 0 other; gactcccaag ctgccgccac tgccgccgcc gccgctccct agtcaagctg caggtccgtg 60 aaaatccaat caagccacac acgagtggag cgcgattgac cgttttgtgc aaaaagacgc 120 ggtagcctaa cctactaaag ctttcatccc tgccaagtct tgccagagaa ctcaactccg 180 ggaaggcttt ctgccaggcc ctgaagttgt actttcatgc accacaggga accatcaccc 240 agcatatgca agtgggtaca tgccctccct tgcaaaagcc aactttctga tctgctcctt 300 tagattttcc ccacggccaa gggttacttt tttccatgaa tggtcaagtt ttgttaaccg 360 gcagaacgca ttgcagagct gtggatttgg atacccgaaa tttaggacct agtgctccaa 420 gccgcgacct agaaggtttt aggctagcca aagcatcagc agcttccgga ggggattctg 480 aggactaaaa aggtctgcag gttgctatgt taatgctgct tgtctttgga gtattgcttc 540 atgaagtccc actgagtggc caggacaagg ctcattctga ggctgacgat gcgcctggca 600 aggccctgta tgactactcc agcctccgcc tccctgcgga gcacattccc ttcttcttgc 660 acaataacag gcatgttgcc tctgtgtgca gggaggattc ccactgtcca tataagaaac 720 acttagaaaa tctaaactac tgctggggtt atgagaagtc ctgcgcacca gagtttagat 780 tcggttcccc cgtttgcagc tatgtcgact tgggatggac cgatactctg gagtcagccc 840 aggacatgtt ctggaggcaa gctgactttg gatatgcgcg agagcgactg ggagagataa 900 gaacgatctg ccagccagag agagcaagcg actcaagtct ggtttgctcc cgttaccttc 960 agtattgtag agctactggt ctatacctgg acttaagaaa catcaagaga aaccacgaca 1020 gattcaagga agattttctt cagggtggtg aaattggtgg atactgtaaa cttgacagtc 1080 atgcactggt gtctgaaggg cagcgtaaaa gtcccctgca gtcttggttt gctgagctac 1140 aaggctacac gcagctcaat ttcaggccta tagaagatgc taaatgtgac atcgttgttg 1200 aaaaaccaac gtatttcatg aaattagatg caggtattaa tatgtaccac cacttctgtg 1260 acttcctgaa tctctacctc actcagcacg ttaacaattc tttcagcacg gacgtgtaca 1320 tcgtgatgtg ggacaccagc acttacgggt atggtgacct cttctccgat acctggaaag 1380 catttactga ctatgacgtc atacatttga aaacctatga ttccaaaaag gtgtgtttta 1440 aagaagccgt gttttcgttg ctgccccgca tgcggtacgg gctgttctat aacacgcctc 1500 tgatctctgg ctgtcagaat acaggattat tcagagcctt ctcccagcat gtgctgcata 1560 ggctgaacat cactcaagag ggacccaagg atggcaaagt tcgagttacc attcttgcac 1620 gcagcacaga ataccggaaa atcctgaacc aagacgagct ggtaaatgca ctgaaaacag 1680 tatccacatt tgaagtccgg gtggttgatt acaagtacag agaactcggg tttttagatc 1740 agctcaggat cacgcacaac acggacatat ttattggcat gcatggagct ggccttaccc 1800 acttactttt ccttccggac tgggctgctg tgttcgagct gtacaactgt gaagatgagc 1860 gctgctactt agacctggcc aggctcagag gcatccacta catcacctgg cggaagccca 1920 gcaaagtatt tcctcaggat aagggtcacc atccaactct gggagaacac ccgaagttta 1980 ccaactactc ttttgatgta gaagaattca tgtaccttgt ccttcaggct gcagagcatg 2040 tactgcagca cccacagtgg ccatttaaga agaaacatga tgagctatag aagtgttgag 2100 gttgtttcca agagtgttga caccctctca cagccataga ctcacaatca gaggagcaga 2160 acagcatgtc atatcctact gtaagaggaa acatgacgtt ttacttctga atatagctca 2220 ggctgacctt gaactagtga tcctcttgcc tgagccaact gagtgctcac cttacaggtg 2280 tgccccacca tgcctgtcta cagagttact ttttgtatat gaaagcacac ctccaggaga 2340 tgctaagtct tccatgtgtt tattgtgtct ttgctattta tcaaaggtat ttttgcactg 2400 aaaaaggtta cttttatagt tcaaaggtgg gcagatgccc attggtgtgg cagagctctc 2460 ctgtggggat gcaaagttgt caacatcggt ggcttcagac ttgatatatg tgtttgttaa 2520 ctgtaatgtg atcttgattc cagagtgtca tggcttcatc tatttggata aactcatcta 2580 tttggataaa ctcagaactg ttgttatttg ccattgtatg ttcataaata tggttgtagg 2640 gtctgggcac atggcttagt gtagaatgct ggccttgcat gtatgggcct ctgggtttaa 2700 tccctagcaa caccacacac acacacacac acacacacac acacacacac acacgtctaa 2760 gtctgtgatt ctcaggacca aactatagga ctacgttata gaccagtaat tagtcaactc 2820 cagattccgt gcatcaagag cctgacaaag atcatgctgt tgtatttatt aattttgttt 2880 ctatatctca tttcaatcat gttctcccca aatgtaatgg cagtgttgat aagagcctgt 2940 cagaacattc tgtagtacca tctccactga cgcttcagcc gtgaagaccc ttcatgctga 3000 cttggcatga agtcttagtt tccatcaggc cagtgtttgt gagcacacac ggctgtgtgt 3060 atctacctct ggcagaatgg aagtaaccct agtctctgta aaacactgcc aagtagccac 3120 atgaagagaa gacactttcc ctgtttattt gttttttgat ttttaaaata aggccattaa 3180 aaacacggta gacctgtgaa ttatcc 3206 // |
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