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EBI DbfetchID AK028555; SV 1; linear; mRNA; HTC; MUS; 2999 BP. XX AC AK028555; XX DT 18-DEC-2002 (Rel. 74, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, DE clone:4632432J04 product:similar to HYPOTHETICAL PROTEIN CGI-147 [Homo DE sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2999 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR Ensembl-Gn; ENSMUSG00000072582; Mus_musculus. DR Ensembl-Tr; ENSMUST00000108021; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..2999 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="0 day neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="4632432J04" FT /tissue_type="skin" FT /db_xref="taxon:10090" FT CDS 232..780 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="similar to HYPOTHETICAL PROTEIN CGI-147 [Homo FT sapiens] (SWISSPROT|Q9Y3E5, evidence: FASTY, 79%ID, FT 100%length, match=543)" FT /db_xref="GOA:Q8R2Y8" FT /db_xref="InterPro:IPR002833" FT /db_xref="MGI:2444848" FT /db_xref="UniProtKB/Swiss-Prot:Q8R2Y8" FT /protein_id="BAC26006.1" FT /translation="MMLSKFLTMEYLVHPGTLSLAAGVACGMCLGWGLRSHLGMFPQNS FT TSEANRDTETGTEASILGESGEYKMILVVRTDLKMGKGKVAAQCSHAAVSAYKQTQRRS FT PQVLKEWEYCGQPKVVVKAPDEDTLIQLLTHAKTLGLTVSLIQDAGRTQIEPGSRTVLG FT IGPGPVELIDEVTGHLKLY" XX SQ Sequence 2999 BP; 845 A; 619 C; 672 G; 863 T; 0 other; agaagaagaa ggatgactgc gcttcgtagt ttctgatccg gaactagttt ttcaggaaac 60 ccggaaggag taggtggcgc gcgcgaagcg tgttccttgt tctggcttgg agacctgcga 120 ggtgagcgag acgagctcca gggtttctca gtgtggccct ggctgtcctg gaactcactc 180 tgtagaccag gctggcctcg aactcaggaa tctgctcaac tgctgggatt aatgatgctc 240 tccaagttct tgactatgga gtatttggtt catcctggta cactcagctt ggctgctgga 300 gttgcttgtg gcatgtgcct gggctggggc ctccggagcc accttgggat gttcccccag 360 aactcaacaa gtgaggcaaa tagagacaca gagactggaa ctgaagcaag catcttggga 420 gagagtgggg aatacaaaat gattcttgtg gttcgaactg accttaaaat ggggaaaggg 480 aaggttgctg cccagtgttc tcatgctgcc gtgtctgcct acaagcagac tcaaaggaga 540 agccctcaag tgctcaaaga gtgggagtac tgtggccagc ccaaagtggt ggtcaaagct 600 ccagatgaag acaccctcat tcaattactc acccatgcaa aaaccttggg actgactgta 660 agtttaatcc aagatgctgg acgtactcag attgaaccag gttctcgaac tgtcctggga 720 attgggccag gaccagtaga actaattgat gaagttactg gccacctaaa actttactag 780 ataagctttt gcttgatgga gattctgtcc gaagactatg gagcctgtca gtaacaataa 840 atgcttaatt cttgtcccac tttaaagtct gttcccatgt tcctctatca tgtactacac 900 cattaatatc ttgagcttaa aatactattg aaggggtaga gagattcctc agtgattaag 960 ggcacttgtt cctcttgcaa aggatgctgg ttcagtttct agtatctgga tctcagttta 1020 caagcatcca gatccagttc cagggaatcc aacaccctct caaccacaag gtatacacag 1080 tatacatata tacacgcagg caagtcctca aacatccaaa gagtacataa agaaaaagga 1140 agtctcaaga ataaaaatac attctctaaa tgctcctgtg gagtgatagg gtctcaaaca 1200 gattggaagt gagacagtgc ctgtaatgac gctgggtgag aaggaggctg cgtttcccag 1260 gtacagttag gcccctgtgt gttgattact cttttctcaa accatgctgt tgtcctttgc 1320 ctttttgagg atctggttca agaaatcata ttgtaatttt tttctgctgc tactttttga 1380 atggctgtta acctcttttt attattaaca gatcattgca tagactcact gcaattttga 1440 tttagatact aactagctgg actttttgag gtggtctcat actgtagctc aggctaatct 1500 ttaacttgtg gaaatcctcc tgccttgacc tcccacctgg gagggatgga agttatgaac 1560 catcataccc agctactctg taaattcatt tctatttcaa agttgaaatt ttatgatcta 1620 tgtagcattt tgttgtttat ttctccagat ccacctgggc taaggtattt cacagctgtt 1680 ctaattcata aactgaaaat tcctctactt taacagtgag acctgtgagt ttgtgaagtg 1740 ataaggattt acaaagtgta aatgtgagaa tttatgggaa ctaaaggact gtaactgtac 1800 ccagccagtt tctcctagaa atttcaggac ctaaataatt ttattatttt agggcacttt 1860 ttctccccgt atccctgagc ctggaactca ctatggaaca ggctgatcta aactcagagg 1920 tcctcctacc tctgcctccc agtgctggga ttaaaaacat gcactagcat gcctgcctac 1980 ataaagcttt cttgacagtt tgctagaatt catttttctt gatagttcta aaagattgac 2040 agtgatttcc aagttcctta tatcctttaa aactataaat gatgttaagg aaagtaagac 2100 cgtaagtagg aactaagcag aatgatgaag acaactgtag gcagtctcca agttaaagtg 2160 cttagtgcat ttttatccta cggaagcata aatggtacag gaccaatcgc aacactgaat 2220 gatgccacag tagcaacagt ttctagacag aatgtttata catgagtcaa gtgatgcaac 2280 cacatgtaac tgagtagaac tcaatcttaa atacatggtt atgactcagg taatttatga 2340 ggcttgctgc agacaaatgg ttccacacta aaagactaga ttcccagctg gggtggctga 2400 ttcaatgacc tgtaacaagc tgggccttac aaggacatag taaaacttgt taattctggt 2460 gacaagtcac ggtatttttc tggttcacct gctcttggta tatacttcat aggactttca 2520 gagtagttct cagagcatac tctgcagagc acaagagttt gctacctacc tgttttcact 2580 agcttaaatg aaagggattc ccggttctag tgtgttcctg ctgatggtcc acatgaacaa 2640 ggaaccatca gattcctcag cccacattca caataaagtc tcacttggcc tgatgaagca 2700 gttaaaaaga gcagtatttt tttttcccca gcgtaggtag gggaagggct ttgggaactg 2760 aaagctgggc aataagaagt ctttagggaa gtcctccttg gtaggtggcc catgctcctg 2820 tagatggccc cacatgcttt caaacagtgt cagcattgat tgaactcagt gcactgttat 2880 gaaagagatc aacctgagag ggagatgcgt aagggttggg gtgctaggct catatagtac 2940 actgtatact tgtatgaaaa tttcagcaaa taaaaaatga ttaaaaacat tttttactc 2999 // |
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