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EBI DbfetchID AK009245; SV 1; linear; mRNA; HTC; MUS; 1494 BP. XX AC AK009245; XX DT 08-FEB-2001 (Rel. 66, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 21) XX DE Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, DE clone:2310009A18 product:RNA 3'-TERMINAL PHOSPHATE CYCLASE (EC 6.5.1.4) DE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) homolog [Homo sapiens], full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1494 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000182574. DR Ensembl-Gn; ENSMUSG00000000339; Mus_musculus. DR Ensembl-Tr; ENSMUST00000000348; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1494 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="2310009A18" FT /tissue_type="tongue" FT /db_xref="taxon:10090" FT CDS 123..1223 FT /codon_start=1 FT /transl_table=1 FT /note="RNA 3'-TERMINAL PHOSPHATE CYCLASE (EC 6.5.1.4) FT (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) homolog [Homo FT sapiens] (SWISSPROT|O00442, evidence: FASTY, 90.4%ID, FT 100%length, match=1098)" FT /note="putative" FT /db_xref="GOA:Q9D7H3" FT /db_xref="HSSP:1QMH" FT /db_xref="InterPro:IPR017770" FT /db_xref="MGI:1913618" FT /db_xref="UniProtKB/Swiss-Prot:Q9D7H3" FT /protein_id="BAB26164.1" FT /translation="MEGQRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRST FT PGLRPQHLSGLEMVRDLCGGHLEGAEIGSTEITFTPEKIRGGVHTADTKTAGSVCLLMQ FT VSMPCVLFAASPSELRLKGGTNAEMAPQIDYTMMVFKPIAEKFGFTFNCDIKTRGYYPK FT GGGEVIVRVSPVKRLDPINLTDRGSVTKIYGRAFVAGVLPLKVAKDMAAAAVRCIRKEI FT RDLYVSIQPVQEARDQAFGNGSGIIIVAETSTGCLFAGSSLGKRGVNADKAGIEAAEML FT LANLRHGGTVDEYLQDQLIIFMALANGISRIKTGSVTLHTQTAIHFAEQLAKAKFTVKK FT SEEEEDATKDTYVIECEGIGMANPHL" FT polyA_signal 1473..1478 FT /note="putative" FT polyA_site 1494 FT /note="putative" XX SQ Sequence 1494 BP; 365 A; 359 C; 429 G; 341 T; 0 other; gctccttccg gcgagctcgg cccggaagcg cactatcagg cctgcgggct tgcgggcgcc 60 tcgtcttttg ccggttgcag cagggacgtg gtcgctgccg gccgggctca gaggcgcccg 120 ccatggaggg ccagcgggtg gaggtggacg gtgggatcat ggaagggggc ggccagatcc 180 tcagggtctc caccgccctg agctgcctcc tgggcctacc cttgcgcgtg cagaagatcc 240 gcgcgggccg cagcacgccg ggcctcaggc ctcagcattt atctggactg gaaatggttc 300 gtgatttgtg tggcgggcac ctggagggag cagaaatcgg ctcaacagag ataaccttta 360 cccccgagaa gatcagaggt ggagtccaca cggcagatac caagacagca gggagtgtgt 420 gcctcttgat gcaggtttca atgccctgtg tcctgtttgc ggcttccccg tcggagctcc 480 gtctgaaagg cggcaccaat gcggagatgg ccccgcagat cgattacacc atgatggttt 540 tcaagccaat tgctgagaag tttggtttca catttaattg tgacattaaa acgaggggct 600 attaccccaa agggggtggt gaagtgattg tccgagtgtc cccagttaaa cgattggacc 660 caataaatct gactgatcga ggctctgtga ccaagattta tgggagagct tttgttgccg 720 gtgttttgcc actaaaagta gcaaaagata tggcggcggc ggctgtgcgg tgcatccgga 780 aggagatccg ggatctgtac gtcagcatcc agcccgtgca ggaggccagg gaccaagcct 840 tcggcaatgg gagtggaatc atcattgttg ctgagacatc cactggctgc ttgtttgctg 900 gatcatcact tggcaaaaga ggtgtgaatg cagacaaggc tgggattgaa gctgctgaaa 960 tgctattagc gaaccttaga cacggtggca ctgtggatga gtatctacaa gaccagctga 1020 ttattttcat ggcgctagcc aatggaattt ccagaataaa aacaggatca gtcacactcc 1080 acacgcagac tgctatacat tttgctgaac agctagcaaa ggccaaattt accgtgaaga 1140 aatcagaaga ggaagaagat gccactaagg acacttacgt catcgagtgt gaaggaattg 1200 ggatggcaaa tccacacctc tagggtgttc acgtacgctc tacctccttg ttgcactgac 1260 ttagcccatg catgctgcaa cacagtgagt gagacgtcag ctaccacagg acttgagtct 1320 ttggagatgg aggttggcac tgtcagttgc tgagaatgct ccatcatgtt aagctcgtgg 1380 gatatctccc cagatataga cagtgaacga tcaaacgtaa tgaatatgtg taatagtcaa 1440 cttcaatatt aacatcatac cctaacgtta taaataaatt gttgttcata ccct 1494 // |
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