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EBI DbfetchID AK008162; SV 1; linear; mRNA; HTC; MUS; 542 BP. XX AC AK008162; XX DT 08-FEB-2001 (Rel. 66, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 19) XX DE Mus musculus adult male small intestine cDNA, RIKEN full-length enriched DE library, clone:2010008N03 product:DJ298J18.2.1 (NOVEL PROTEIN SIMILAR TO DE PREDICTED YEAST AND PLANT PROTEINS (ISOFORM 1)) (UNCHARACTERIZED DE HEMATOPOIETIC STEM/PROGENITOR CELLS PROTEIN MDS031) homolog [Homo sapiens], DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-542 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000142516. DR Ensembl-Gn; ENSMUSG00000079411; Mus_musculus. DR Ensembl-Tr; ENSMUST00000070801; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..542 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="2010008N03" FT /tissue_type="small intestine" FT /db_xref="taxon:10090" FT CDS 26..523 FT /codon_start=1 FT /transl_table=1 FT /note="DJ298J18.2.1 (NOVEL PROTEIN SIMILAR TO PREDICTED FT YEAST AND PLANT PROTEINS (ISOFORM 1)) (UNCHARACTERIZED FT HEMATOPOIETIC STEM/PROGENITOR CELLS PROTEIN MDS031) homolog FT [Homo sapiens] (SPTR|Q9NP73, evidence: FASTY, 87.3%ID, FT 100%length, match=495)" FT /note="putative" FT /db_xref="GOA:Q9D8C3" FT /db_xref="InterPro:IPR007235" FT /db_xref="MGI:1914824" FT /db_xref="UniProtKB/Swiss-Prot:Q9D8C3" FT /protein_id="BAB25504.1" FT /translation="MKRAFVTVGTTSFDELVARVVANDCVQILESLGYNHLVLQVGRGT FT VVPKPFRTESFTLDVYRYKDSLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKL FT MNNHQFELAKQLHKEGHLFYCTCSTLPGLLQSMDLSTLKCYPPGQPEKFSAFLDKVVGL FT QK" XX SQ Sequence 542 BP; 152 A; 115 C; 127 G; 148 T; 0 other; gaattccgaa tctggaaccc gcgcgatgaa gagagcgttt gtgactgtcg ggaccaccag 60 tttcgacgag ctcgtcgcac gggtggtcgc taacgactgc gttcagatcc tcgagagtct 120 gggttacaac catcttgtcc tccaagttgg tagaggcact gtggtgccca aaccattccg 180 tactgagtca ttcactctgg atgtttacag gtataaggat tctttgaaag aagaccttca 240 gcaagctgat cttgtcatta gccacgcagg tgcaggaagc tgtttggaga gtctggagaa 300 aggcaaacca cttgtggtag ttgtaaatga aaagttaatg aacaatcatc aatttgaatt 360 ggcaaagcag ttgcacaaag aaggccatct cttttattgt acctgcagca cgcttcctgg 420 gctgttacag tcaatggatt tatcaacact gaaatgttat cctcctggcc agccagaaaa 480 attttctgca tttttggata aagttgttgg attacaaaaa taaactctca acactttaaa 540 at 542 // |
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