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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK006589; SV 1; linear; mRNA; HTC; MUS; 776 BP.
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AC   AK006589;
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DT   08-FEB-2001 (Rel. 66, Created)
DT   23-SEP-2008 (Rel. 97, Last updated, Version 19)
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DE   Mus musculus adult male testis cDNA, RIKEN full-length enriched library,
DE   clone:1700034A18 product:inferred: RIKEN cDNA 1110018J18 gene / putative
DE   [Mus musculus], full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
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RN   [1]
RP   1-776
RA   Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T.,
RA   Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T.,
RA   Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y.,
RA   Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A.,
RA   Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C.,
RA   Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K.,
RA   Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M.,
RA   Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T.,
RA   Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   DOI; 10.1126/science.1112014
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The transcriptional landscape of the mammalian genome.";
RL   Science 309(5740):1559-1563(2005).
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RN   [3]
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309:1564-1566(2005).
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RN   [4]
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420:563-573(2002).
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RN   [5]
RX   DOI; 10.1038/35055500
RX   PUBMED; 11217851.
RA   RIKEN FANTOM Consortium;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
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RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
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RN   [7]
RX   DOI; 10.1101/gr.145100
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
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RN   [8]
RX   DOI; 10.1101/gr.152600
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   ASTD; TRAN00000155389.
DR   Ensembl-Gn; ENSMUSG00000021482; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000021938; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000099434; Mus_musculus.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
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FH   Key             Location/Qualifiers
FH
FT   source          1..776
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="1700034A18"
FT                   /tissue_type="testis"
FT                   /db_xref="taxon:10090"
FT   CDS             <1..562
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /note="inferred: RIKEN cDNA 1110018J18 gene / putative [Mus
FT                   musculus] (UniGene|Mm.35724 TIGR-MGI1|TC22303, evidence:
FT                   UG/TGI)"
FT                   /note="putative"
FT                   /note="start codon is not identified"
FT                   /db_xref="InterPro:IPR012336"
FT                   /db_xref="MGI:1913379"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9D1A0"
FT                   /protein_id="BAB24662.1"
FT                   /translation="DASGRRVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSV
FT                   LREADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEISSSGQSP
FT                   HIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPGNNIHFVHRDRNRLDHKPI
FT                   NSVLQLVGVQPVNFMSRPTVIHV"
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SQ   Sequence 776 BP; 228 A; 172 C; 179 G; 197 T; 0 other;
     ggacgcgtct gggagacggg tgacgttcgg agcgctgttc cgagagcggc gagccgtggt        60
     ggtgtttgtg aggcatttct tgtgttacgt ctgtaaagaa tatgtcgaag atctggccaa       120
     aatccccaag agcgtcctcc gagaagcaga tgtcaccctc atagtgattg gacaatcatc       180
     ataccatcat attgagcctt tctgcaaact gactggatat tctcatgaaa tctatgttga       240
     tcctgagaga gaaatttaca aaagattggg aatgaaaaga ggtgaagaaa tttcctcctc       300
     tggacagagc ccccacataa agtccaacct gctctcggga agccttcaga gcctgtggcg       360
     ggcagtcact ggcccacttt ttgatttcca aggagaccca gctcagcaag gaggaaccct       420
     cattttaggt ccaggtaaca acatccactt tgtgcaccga gacaggaata ggttggatca       480
     caaacccata aactctgttt tacagcttgt gggggttcag cctgtgaact tcatgagcag       540
     acctacagtc atccacgtgt gactttacgt ggcatcttcc acttgtgaat gggcccttaa       600
     aacgtgaacc aaaatgccag gcaccatggc ttcatagggc tatgaaacac agaacttatg       660
     tgcctataga actacatgct gagggacatc agttgtcaga aatggaacag acagtttaaa       720
     ttttataact tctataattt tatacaaaat atataaaagt caaacattat aaaact           776
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