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EBI DbfetchID AK005969; SV 1; linear; mRNA; HTC; MUS; 1091 BP. XX AC AK005969; XX DT 08-FEB-2001 (Rel. 66, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 21) XX DE Mus musculus adult male testis cDNA, RIKEN full-length enriched library, DE clone:1700013N18 product:UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 4 (EC DE 6.3.2.19) (UBIQUITIN- PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN) (E2(17)KB DE 4) homolog [Rattus norvegicus], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1091 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR Ensembl-Gn; ENSMUSG00000063447; Mus_musculus. DR Ensembl-Tr; ENSMUST00000072578; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1091 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="1700013N18" FT /tissue_type="testis" FT /db_xref="taxon:10090" FT CDS 234..677 FT /codon_start=1 FT /transl_table=1 FT /note="UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 4 (EC FT 6.3.2.19) (UBIQUITIN- PROTEIN LIGASE) (UBIQUITIN CARRIER FT PROTEIN) (E2(17)KB 4) homolog [Rattus norvegicus] FT (SWISSPROT|P70711, evidence: FASTY, 100%ID, 100%length, FT match=441)" FT /note="putative" FT /db_xref="GOA:Q6ZWY6" FT /db_xref="HSSP:1AYZ" FT /db_xref="InterPro:IPR000608" FT /db_xref="MGI:1920568" FT /db_xref="UniProtKB/Swiss-Prot:Q6ZWY6" FT /protein_id="BAB24345.1" FT /translation="MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPY FT QGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLL FT SISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM" XX SQ Sequence 1091 BP; 305 A; 282 C; 244 G; 260 T; 0 other; gagcacaaaa aaggcggcta cagggtgatg cgacaaccga tgtgaagaca gatacagtgc 60 ccacggtggc tggcccggaa gctgagtggg cctcggccct cagcgcattc tgccagggcc 120 aggccagaac tgcctgcctc ctcttctgcg gctgatccaa aaccagcaag gcagccccag 180 gccctcggtg cctgcctcct tccacctggg gcctaccaag acagccttcc accatggctc 240 tgaagagaat ccacaaggaa ctgaacgacc tggcccagga tcccccagca cagtgttcag 300 caggtcctgt cggggaagat atgtttcact ggcaagctac aatcatgggg ccaaatgata 360 gtccctatca gggcggagca tttttcttga caattgattt cccaacagag taccccttca 420 aaccacctaa ggttgaattt acaacaagaa tttatcatcc aaatgttaac agtaacggca 480 gtatttgtct tgatattctt cggtcacagt ggtctccagc actaactatt tccaaagtac 540 ttttgtccat cagttctctg ttgtgtgacc ccaatccaga tgatccctta gtgcctgaga 600 ttgctcagat ctacaaaaca gatagagaca agtacaacag aacagctcgg gaatggactc 660 agaaatatgc gatgtgacta aagagaatac tggatatcct ctacaaataa aagctagggg 720 aactctgaaa gagaagttct tttgattccc accggactgt ttcccatgaa cccacgccca 780 cgctgtacct gcctcatcct ccctggtgca ccgtcttcac ctgatacagt accgctgcat 840 gttgcacgca ccagaaatac tgtaccaaca ctgtctccta gcagacgagc gttctccagg 900 cataacctgg atgtgagatt aaaagttttc cttattgact taaatctgga taaccacaag 960 gtgtgagggt ggtgggtaca caatactgct cagaaggggt aaaggtcccc caatctataa 1020 gagacaatga gattgctttt aagtggaagc catttaaatt taaatttttt taatttataa 1080 aaagctaggt g 1091 // |
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