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EBI DbfetchID AK004001; SV 1; linear; mRNA; HTC; MUS; 1509 BP. XX AC AK004001; XX DT 08-FEB-2001 (Rel. 66, Created) DT 07-OCT-2008 (Rel. 97, Last updated, Version 22) XX DE Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched DE library, clone:1110031F06 product:UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 3 DE (EC 6.3.2.19) (UBIQUITIN- PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN) DE (E2(17)KB 3) homolog [Homo sapiens], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1509 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR Ensembl-Gn; ENSMUSG00000078578; Mus_musculus. DR Ensembl-Tr; ENSMUST00000106291; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1509 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="18-day embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="1110031F06" FT /tissue_type="whole body" FT /db_xref="taxon:10090" FT CDS 248..691 FT /codon_start=1 FT /transl_table=1 FT /note="UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 3 (EC FT 6.3.2.19) (UBIQUITIN- PROTEIN LIGASE) (UBIQUITIN CARRIER FT PROTEIN) (E2(17)KB 3) homolog [Homo sapiens] FT (SWISSPROT|P47986, evidence: FASTY, 100%ID, 100%length, FT match=441)" FT /note="putative" FT /db_xref="GOA:P61079" FT /db_xref="InterPro:IPR000608" FT /db_xref="MGI:1913355" FT /db_xref="UniProtKB/Swiss-Prot:P61079" FT /protein_id="BAB23116.1" FT /translation="MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPY FT QGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL FT SICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM" XX SQ Sequence 1509 BP; 423 A; 321 C; 318 G; 447 T; 0 other; tatctacccc cgatcttgtg gctgtgcgtg cgcgtgaccc cgtaggcgcg gggaggcacc 60 agctgccgcg cggggaggag gccgaggccg cagctcgagg gaggccccgg ccctctgcgc 120 ctgtgtctgg cagagccggt gtgagaagaa gagacaaccc ttccccgccg ccgggataat 180 caagaatttt ggccggacct ttgagtacac ctcgggatag tgaggagccc ggcgaaaagc 240 acagactatg gcgctgaaac ggattaataa ggaacttagt gatttggccc gtgaccctcc 300 agcacaatgt tctgcaggtc cagttggaga tgacatgttt cattggcaag ccacaattat 360 gggacctaat gacagcccat atcaaggtgg tgtattcttt ttgacaattc attttcctac 420 agactacccc ttcaaaccac ctaaggttgc atttacaaca agaatttatc atccaaatat 480 taacagtaat ggcagcattt gtcttgatat tctaagatca cagtggtctc ctgctttaac 540 tatttctaaa gttcttttat ccatttgttc actgctatgt gatccaaacc cagacgaccc 600 cctagtgcca gagattgcac ggatctataa aacagacaga gataagtaca acagaatatc 660 tcgggaatgg actcagaagt atgccatgtg atgctacctt acagtcagaa taacctgcat 720 tatagctgga ataaacttta aattactgtt ccttttttga ttttcttatc cggctgctcc 780 cctatcagac ctcatctttt ttaattttat tttttgttta cctccctcca ttcattcaca 840 tgctcatctg agaagactta agttcttcca gctttggaca ataactgctt ttagaaactg 900 taaagtagtt acacgagaac agttgcccaa gattcagaaa tttttttaaa aactggagca 960 tgtgtattat gtggccaatg tcttcactct aacttggtta tgagactaaa ccaatcctca 1020 ctgctctaac atgctgaaga agccatctga gggggaggga gatggatgct cagctgtcac 1080 atcaaaggaa gcagcattat tctagcagca tccgttcttg tttaaacctt ccactgttag 1140 aggtttgagg ttacatgata tactttatgc tcataactga tgtggctgga gaattggtat 1200 tgaattatag catcagcaga acagaaaatg tgatgtattt tatgcatgtc aataaaggaa 1260 tgacctgttc ttgttctaca gagaatggaa attggaagtc aaacaccctt tgtattccaa 1320 aatagggtct caaaacattt tgtaattttc atttaaattg ttaggaggct tggagctatt 1380 agttaatcta tcttccaata ctgtttaata tagcactgaa taaatgatgc gagttgtcaa 1440 tggatgagtg atcaactaat agctctccta gtaattgatt tatttttctt caatagagtt 1500 gcataaacc 1509 // |
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