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EBI DbfetchID AK003985; SV 1; linear; mRNA; HTC; MUS; 885 BP. XX AC AK003985; XX DT 08-FEB-2001 (Rel. 66, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 20) XX DE Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched DE library, clone:1110030K05 product:6-phosphogluconolactonase, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-885 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000142106. DR Ensembl-Gn; ENSMUSG00000031807; Mus_musculus. DR Ensembl-Tr; ENSMUST00000034264; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..885 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="18-day embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="1110030K05" FT /tissue_type="whole body" FT /db_xref="taxon:10090" FT CDS 35..808 FT /codon_start=1 FT /transl_table=1 FT /note="6-phosphogluconolactonase (MGD|MGI:1913421, FT evidence: Direct assignment)" FT /note="putative" FT /db_xref="GOA:Q9CQ60" FT /db_xref="InterPro:IPR005900" FT /db_xref="InterPro:IPR006148" FT /db_xref="MGI:1913421" FT /db_xref="UniProtKB/Swiss-Prot:Q9CQ60" FT /protein_id="BAB23106.1" FT /translation="MAAPAPSLISVFSSPQELGASLAQLVAQRAASCLEGDRGRFALGL FT SGGSLVSMLARDLPAAAAPAGPASFARWTLGFCDERLVPFDHAESTYGLYRTHLLSKLP FT IPDSQVLTINPALPVEDAAEDYARKLRQALQGDAVPVFDLLILGVGPDGHTCSLFPDHP FT LLQEREKIVAPISDSPKPPPQRVTLTLPVLNAAQSIIFVATGEGKAAVLKRILEDKEGT FT LPAALVQPRTGALCWFLDEAAARLLSVPFEKHSTL" FT polyA_signal 867..872 FT /note="putative" FT polyA_site 885 FT /note="putative" XX SQ Sequence 885 BP; 143 A; 306 C; 275 G; 161 T; 0 other; gctctgccgg gagcgccgcc gcctccccac cgccatggca gcacccgcgc ccagtctcat 60 ctcggtcttc tccagcccgc aagagctggg cgcgtcgctg gcgcagctgg tggcgcagcg 120 ggccgcgagc tgcctggaag gggaccgtgg ccgcttcgcg cttggtctgt caggcggcag 180 cctggtctcc atgctagccc gagacctgcc cgccgccgcc gctcccgctg gaccagccag 240 ctttgcgcgc tggacgctcg gcttctgcga cgagcgcctc gtgcccttcg accacgccga 300 gagcacgtac ggcctctacc ggacacacct gctctcaaag ctgcccatcc cagacagcca 360 ggtccttacc atcaatcctg ccctacctgt ggaggatgct gcagaggact atgccaggaa 420 actgagacag gccttgcaag gagacgctgt ccctgtgttt gacctgctga tcctgggagt 480 gggccctgac ggccatacct gttcgctctt ccctgaccat cccctcctac aggagcggga 540 gaagatcgtg gctcccatca gtgactcccc aaagccacca ccgcagaggg tgaccctaac 600 gcttcctgtg ctgaacgcag cccaaagtat catctttgtg gccacggggg aaggcaaggc 660 agctgtgctg aagcgcatcc tggaggacaa ggagggcacg ttgcccgccg ccttggtgca 720 gccgcgcacg ggcgccctct gctggttcct ggacgaggca gctgcccggc tgctgtctgt 780 gcccttcgag aagcattcca cattgtaggg ggtgcgccat gcacgccgtg ggcacttcgg 840 gtgttgtggg agcggactag ctgcggatta aacagctttg ctcgg 885 // |
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