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EBI DbfetchID AK003782; SV 1; linear; mRNA; HTC; MUS; 973 BP. XX AC AK003782; XX DT 08-FEB-2001 (Rel. 66, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 21) XX DE Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched DE library, clone:1110018J18 product:hypothetical Thioredoxin-like structure DE containing protein, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-973 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000155389. DR Ensembl-Gn; ENSMUSG00000021482; Mus_musculus. DR Ensembl-Tr; ENSMUST00000099434; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..973 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="18-day embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="1110018J18" FT /tissue_type="whole body" FT /db_xref="taxon:10090" FT CDS 28..708 FT /codon_start=1 FT /transl_table=1 FT /note="hypothetical Thioredoxin-like structure containing FT protein (SCOP|52833, evidence: SCOP)" FT /note="putative" FT /db_xref="MGI:1913379" FT /db_xref="UniProtKB/Swiss-Prot:Q9D1A0" FT /protein_id="BAB22993.1" FT /translation="MAAPVTRQVSGCAGRVPSPAGSVTERGQPLAAAVAELPVLDASGR FT RVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLREADVTLIVIGQSSYHHI FT EPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEISSSGQSPHIKSNLLSGSLQSLWRAVT FT GPLFDFQGDPAQQGGTLILGPGNNIHFVHRDRNRLDHKPINSVLQLVGVQPVNFMSRPT FT VIHV" FT polyA_signal 957..962 FT /note="putative" FT polyA_site 973 FT /note="putative" XX SQ Sequence 973 BP; 260 A; 234 C; 244 G; 235 T; 0 other; ggacctgagc ggtcgccctc ctccgcgatg gccgcgccgg tgacgcggca ggtcagcggc 60 tgcgcaggcc gggtcccgag cccggctggc tcggtcacag agcgcgggca gccgctagcg 120 gccgccgtag cggagctgcc cgtgctggac gcgtctggga gacgggtgac gttcggagcg 180 ctgttccgag agcggcgagc cgtggtggtg tttgtgaggc atttcttgtg ttacgtctgt 240 aaagaatatg tcgaagatct ggccaaaatc cccaagagcg tcctccgaga agcagatgtc 300 accctcatag tgattggaca atcatcatac catcatattg agcctttctg caaactgact 360 ggatattctc atgaaatcta tgttgatcct gagagagaaa tttacaaaag attgggaatg 420 aaaagaggtg aagaaatttc ctcctctgga cagagccccc acataaagtc caacctgctc 480 tcgggaagcc ttcagagcct gtggcgggca gtcactggcc cactttttga tttccaagga 540 gacccagctc agcaaggagg aaccctcatt ttaggtccag gtaacaacat ccactttgtg 600 caccgagaca ggaataggtt ggatcacaaa cccataaact ctgttttaca gcttgtgggg 660 gttcagcctg tgaacttcat gagcagacct acagtcatcc acgtgtgact ttacgtggca 720 tcttccactt gtgaatgggc ccttaaaacg tgaaccaaaa tgccaggcac catggcttca 780 tagggctatg aaacacagaa cttatgtgcc tatagaacta catgctgagg gacatcagtt 840 gtcagaaatg gaacagacag tttaaatttt ataacttcta taattttata caaaatatat 900 aaaagtcaaa cattataaaa ctatcattgt taatatcatt ttatgagtat ccactcaata 960 aaagattttt ggc 973 // |
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