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EBI DbfetchID AK003292; SV 1; linear; mRNA; HTC; MUS; 575 BP. XX AC AK003292; XX DT 08-FEB-2001 (Rel. 66, Created) DT 23-SEP-2008 (Rel. 97, Last updated, Version 20) XX DE Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched DE library, clone:1110002F01 product:similar to ADRENAL GLAND PROTEIN AD-001 DE (HSPC170 PROTEIN) (HSPC152) (HYPOTHETICAL 14.2 KDA PROTEIN) [Homo sapiens], DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-575 RA Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T., RA Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T., RA Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K., RA Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y., RA Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., RA Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C., RA Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K., RA Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M., RA Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T., RA Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR Ensembl-Gn; ENSMUSG00000038812; Mus_musculus. DR Ensembl-Tr; ENSMUST00000088257; Mus_musculus. DR Ensembl-Tr; ENSMUST00000116551; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..575 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="18-day embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="1110002F01" FT /tissue_type="whole body" FT /db_xref="taxon:10090" FT CDS 33..410 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="similar to ADRENAL GLAND PROTEIN AD-001 (HSPC170 FT PROTEIN) (HSPC152) (HYPOTHETICAL 14.2 KDA PROTEIN) [Homo FT sapiens] (SPTR|Q9UI30, evidence: FASTY, 80%ID, 100%length, FT match=375)" FT /db_xref="InterPro:IPR005651" FT /db_xref="MGI:1914924" FT /db_xref="UniProtKB/Swiss-Prot:Q9DCG9" FT /protein_id="BAB22695.1" FT /translation="MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARM FT IPKVEWAALVQAADTLNLAEVPKEPTEGYEHDETFLRKMQHVLLEVDVLEGTLQCPESG FT RLFPISRGIPNMLLNDEETET" FT polyA_signal 559..564 FT /note="putative" FT polyA_site 575 FT /note="putative" XX SQ Sequence 575 BP; 122 A; 160 C; 154 G; 139 T; 0 other; ggttccggcc tcacgcgctc cgctgtgaca acatgaaact gctcacccac aatctcctaa 60 gctcccatgt gcggggcgtg ggcacgcgtg gcttcccgct gcgcctgcag gccactgagg 120 tccgcatcaa ccccgtggag ttcaacccgg agttcgtggc gcggatgatc cccaaagtgg 180 agtgggcggc gcttgtgcag gcagcggaca ccttaaactt ggccgaggta cccaaagagc 240 cgactgaagg ctatgagcac gacgagacat ttttgaggaa gatgcaacac gtgttgcttg 300 aggttgatgt actggagggc accctgcaat gcccagaatc tggtcgtctt ttccccatca 360 gccgcgggat ccccaatatg ctgttgaatg atgaggagac tgagacgtaa ccttgctagc 420 cgccactttg gtattttgtt gactgtgtgt ttctgttgta cggtctgtta aatagacgtg 480 tcatgtgtga cccccaaact ccccccagtg actcaccgac caccgtgtac ttgagctcca 540 tagtatattt tttttctcat taaaggttca aaacc 575 // |
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