EBI Dbfetch

ID   AK003134; SV 1; linear; mRNA; HTC; MUS; 880 BP.
XX
AC   AK003134;
XX
DT   08-FEB-2001 (Rel. 66, Created)
DT   23-SEP-2008 (Rel. 97, Last updated, Version 19)
XX
DE   Mus musculus adult male heart cDNA, RIKEN full-length enriched library,
DE   clone:1010001M13 product:6-phosphogluconolactonase, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-880
RA   Adachi J., Aizawa K., Akahira S., Akimura T., Arai A., Aono H., Arakawa T.,
RA   Bono H., Carninci P., Fukuda S., Fukunishi Y., Furuno M., Hanagaki T.,
RA   Hara A., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Imotani K.,
RA   Ishii Y., Itoh M., Izawa M., Kasukawa T., Kato H., Kawai J., Kojima Y.,
RA   Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A.,
RA   Nishi K., Nomura K., Numazaki R., Ohno M., Okazaki Y., Okido T., Owa C.,
RA   Saito H., Saito R., Sakai C., Sakai K., Sano H., Sasaki D., Shibata K.,
RA   Shibata Y., Shinagawa A., Shiraki T., Sogabe Y., Suzuki H., Tagami M.,
RA   Tagawa A., Takahashi F., Tanaka T., Tejima Y., Toya T., Yamamura T.,
RA   Yasunishi A., Yoshida K., Yoshino M., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (10-JUL-2000) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   DOI; 10.1126/science.1112014
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The transcriptional landscape of the mammalian genome.";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309:1564-1566(2005).
XX
RN   [4]
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420:563-573(2002).
XX
RN   [5]
RX   DOI; 10.1038/35055500
RX   PUBMED; 11217851.
RA   RIKEN FANTOM Consortium;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   ASTD; TRAN00000142106.
DR   Ensembl-Gn; ENSMUSG00000031807; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000034264; Mus_musculus.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
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FH   Key             Location/Qualifiers
FH
FT   source          1..880
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="1010001M13"
FT                   /tissue_type="heart"
FT                   /db_xref="taxon:10090"
FT   CDS             31..804
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="6-phosphogluconolactonase (MGD|MGI:1913421,
FT                   evidence: Direct assignment)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q9CQ60"
FT                   /db_xref="InterPro:IPR005900"
FT                   /db_xref="InterPro:IPR006148"
FT                   /db_xref="MGI:1913421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9CQ60"
FT                   /protein_id="BAB22594.1"
FT                   /translation="MAAPAPSLISVFSSPQELGASLAQLVAQRAASCLEGDRGRFALGL
FT                   SGGSLVSMLARDLPAAAAPAGPASFARWTLGFCDERLVPFDHAESTYGLYRTHLLSKLP
FT                   IPDSQVLTINPALPVEDAAEDYARKLRQALQGDAVPVFDLLILGVGPDGHTCSLFPDHP
FT                   LLQEREKIVAPISDSPKPPPQRVTLTLPVLNAAQSIIFVATGEGKAAVLKRILEDKEGT
FT                   LPAALVQPRTGALCWFLDEAAARLLSVPFEKHSTL"
FT   polyA_signal    863..868
FT                   /note="putative"
FT   polyA_site      880
FT                   /note="putative"
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SQ   Sequence 880 BP; 145 A; 303 C; 273 G; 159 T; 0 other;
     ggccgggaac accgccgcct ccccaccgcc atggcagcac ccgcgcccag tctcatctcg        60
     gtcttctcca gcccgcaaga gctgggcgcg tcgctggcgc agctggtggc gcagcgggcc       120
     gcgagctgcc tggaagggga ccgtggccgc ttcgcgcttg gtctgtcagg cggcagcctg       180
     gtctccatgc tagcccgaga cctgcccgcc gccgccgctc ccgctggacc agccagcttt       240
     gcgcgctgga cgctcggctt ctgcgacgag cgcctcgtgc ccttcgacca cgccgagagc       300
     acgtacggcc tctaccggac acacctgctc tcaaagctgc ccatcccaga cagccaggtc       360
     cttaccatca atcctgccct acctgtggag gatgctgcag aggactatgc caggaaactg       420
     agacaggcct tgcaaggaga cgctgtccct gtgtttgacc tgctgatcct gggagtgggc       480
     cctgacggcc atacctgttc gctcttccct gaccatcccc tcctacagga gcgggagaag       540
     atcgtggctc ccatcagtga ctccccaaag ccaccaccgc agagggtgac cctaacgctt       600
     cctgtgctga acgcagccca aagtatcatc tttgtggcca cgggggaagg caaggcagct       660
     gtgctgaagc gcatcctgga ggacaaggag ggcacgttgc ccgccgcctt ggtgcagccg       720
     cgcacgggcg ccctctgctg gttcctggac gaggcagctg cccggctgct gtctgtgccc       780
     ttcgagaagc attccacatt gtagggggtg cgccatgcac gccgtgggca cttcgggtgt       840
     tgtgggagcg gactagctgc ggattaaaca gctttgctgg                             880
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