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EBI DbfetchID AJ489944; SV 2; linear; genomic DNA; STD; FUN; 1939 BP. XX AC AJ489944; XX DT 01-JUL-2002 (Rel. 72, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 3) XX DE Aspergillus niger rglA gene for rhamnogalacturonan lyase A, exons 1-10 XX KW rglA gene; rhamnogalacturonan lyase A. XX OS Aspergillus niger OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; OC Eurotiomycetidae; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; OC Aspergillus. XX RN [1] RP 1-1939 RA de Vries R.P.; RT ; RL Submitted (21-JUN-2002) to the EMBL/GenBank/DDBJ databases. RL de Vries R.P., MGIM, Wageningen University, Dreijenlaan 2 Wageningen, 6703 RL HA, NETHERLANDS. XX RN [2] RX DOI; 10.1016/S0014-5793(02)03391-4 RX PUBMED; 12387863. RA de Vries R.P., Jansen J., Aguilar G., Paenicova L., Joosten J.A.E., RA Wulfert F., Visser J.; RT "Expression profiling of pectinolytic genes from Aspergillus niger"; RL FEBS Lett. 530(1-3):41-47(2002). XX DR CABRI; CBS 120.49. XX FH Key Location/Qualifiers FH FT source 1..1939 FT /organism="Aspergillus niger" FT /strain="CBS 120.49" FT /mol_type="genomic DNA" FT /db_xref="taxon:5061" FT mRNA join(<1..253,301..402,451..572,619..688,735..810,857..908, FT 956..1167,1215..1436,1495..1741,1799..>1939) FT /gene="rglA" FT CDS join(1..253,301..402,451..572,619..688,735..810,857..908, FT 956..1167,1215..1436,1495..1741,1799..>1939) FT /gene="rglA" FT /product="rhamnogalacturonan lyase A" FT /function="involved in pectin degradation" FT /db_xref="GOA:Q8NJK5" FT /db_xref="InterPro:IPR016590" FT /db_xref="UniProtKB/TrEMBL:Q8NJK5" FT /protein_id="CAD36194.1" FT /translation="MLSKTSLLSLLSLAAGVVNADFGITTSDSYVINANSPNSLVFTVD FT RGSCDITSIVHYGTELQYSGKGSHIGSGLGTATVSATKSGDYIKVTCETDTLTQYMGVH FT DGDRIIHMATYITEEPSIGELRFIARLNSDVLPNEEPFGDVSNTADGEPIEGSDVFLVD FT GETRSKFYSSQRFIDDQRHCIAGDEHRVCMILNQYETSSGGPFHRDINSNNGGDYNSLY FT WYMNSGHVQLESYRMGLHGPYSMYFSRSGTPSTDIDTSFFADLDIEGYVAESGRGTVSG FT TASGADSSFDWVVHWYNDDAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYVVATSEVT FT VSAGSSTSKDISGSVETGTTIFKIGDWDGQPTGFRNAENQLRMHPSDSRMSDWGPLTYT FT VGSSSLTDFPMAIFKSVNSPVTIKFTATSDQTGAATLRIRTTLSFAGGRPQATINDYEG FT SAPSAPTNLDSRGVTRGAYRGYGDVYDVSVPEGTIVEGENT" FT exon 1..253 FT /gene="rglA" FT /number=1 FT intron 254..300 FT /gene="rglA" FT /number=1 FT exon 301..402 FT /gene="rglA" FT /number=2 FT intron 403..450 FT /gene="rglA" FT /number=2 FT exon 451..572 FT /gene="rglA" FT /number=3 FT intron 573..618 FT /gene="rglA" FT /number=3 FT exon 619..688 FT /gene="rglA" FT /number=4 FT intron 689..734 FT /gene="rglA" FT /number=4 FT exon 735..810 FT /gene="rglA" FT /number=5 FT intron 811..856 FT /gene="rglA" FT /number=5 FT exon 857..908 FT /gene="rglA" FT /number=6 FT intron 909..955 FT /gene="rglA" FT /number=6 FT exon 956..1167 FT /gene="rglA" FT /number=7 FT intron 1168..1214 FT /gene="rglA" FT /number=7 FT exon 1215..1436 FT /gene="rglA" FT /number=8 FT intron 1437..1494 FT /gene="rglA" FT /number=8 FT exon 1495..1741 FT /gene="rglA" FT /number=9 FT intron 1742..1798 FT /gene="rglA" FT /number=9 FT exon 1799..1939 FT /gene="rglA" FT /number=10 XX SQ Sequence 1939 BP; 470 A; 546 C; 469 G; 454 T; 0 other; atgttgtcca aaacgtcgct tctgtcgctc ctctcgcttg cagctggggt cgtcaatgca 60 gactttggca taacgaccag tgattcctat gtcataaacg ccaattctcc caactcgttg 120 gtgtttaccg ttgaccgcgg aagttgcgat atcacttcta tcgtgcatta tggcacagag 180 ctgcagtatt ccggcaaggg tagccatatc ggctccggtc ttggaactgc gacagtttct 240 gctactaaga gcggtaagtg gactttgagt acgcgagagt gacaagctga ttaggagcag 300 gcgactacat caaggtgacc tgtgagacgg acacattgac ccagtatatg ggtgtccatg 360 atggggaccg tatcattcat atggcaacct acattaccga gggtgagtat tgtgtcaaag 420 ttttctacgt tagtctctaa catccaccag agccatctat cggtgaattg cggtttattg 480 ctcgactcaa ctcagatgta ctccccaacg aggagccatt cggcgatgtg tccaacactg 540 ctgatgggga gccgattgaa ggatctgacg tggtatgtct tctgggggat ttcgatgacg 600 ttgctaattt cacggcagtt cctcgtcgat ggcgagactc gcagcaagtt ctactccagc 660 cagcgtttca ttgacgatca gagacactgt aagaaatgat ggaatatcta cagggttatc 720 gctgactatt caaggcattg cgggcgatga gcaccgcgtc tgtatgatac tcaatcaata 780 cgagacctct tccggtggtc cctttcacag gtaggcacat aactctctat cgcaaggaat 840 atgctcacag ctacagggac atcaactcca acaacggagg tgactacaac tccctctact 900 ggtacatggt acgtttacta ctttcttctc aaatccacag ctactgacca tccagaactc 960 gggccatgtc caactcgagt cctaccgcat gggtctccac ggaccgtact cgatgtactt 1020 cagccgcagc ggcactccca gcaccgacat tgacacgtcc ttcttcgcgg acctcgacat 1080 cgagggctac gtagccgaat caggcagggg aaccgtatcc ggaaccgcgt caggcgctga 1140 ctcgagcttc gactgggtcg ttcactggta caccctttca cccacacaac catcaaccct 1200 agctaaccgg gcaggtacaa cgatgacgcc caatactgga catacacatc ctcctccggc 1260 agcttcacct cccccgccat gaaaccagga acatacacca tggtatatta tcaaggcgag 1320 tacgtcgtgg ccacaagcga agtgaccgtc agcgccggct cgagcacaag caaggacatt 1380 tccggctccg tcgaaacagg aacgaccatt ttcaagattg gcgattggga cggacagtaa 1440 gtctccccct tctaccacac acatcaatta cacatctaac acatcatggt atagaccaac 1500 cggcttccgc aatgcagaaa accagctccg catgcacccc tccgactccc gaatgtccga 1560 ctggggccct ctaacctaca ccgttggcag ctcctccctg actgatttcc ccatggccat 1620 tttcaagagc gtcaacagtc cagtaaccat caagttcact gcaacatctg accagactgg 1680 tgcagcgacg ctgcgtatca gaactacgct gtcgttcgcg ggtggacggc ctcaagctac 1740 ggtaggcttc ctctttcctt cctcctttat gtgcagcgta gctaagatat ataaacagat 1800 caacgactac gaaggatccg cgccgtccgc acctacgaat ttggactctc gtggcgttac 1860 tcgtggtgcg tatagagggt atggggatgt ttacgatgtt tcggttcctg aggggacgat 1920 tgtggagggg gagaacacg 1939 // |
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