spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AJ427921; SV 1; linear; genomic DNA; STD; PRO; 1281 BP.
XX
AC   AJ427921;
XX
DT   01-APR-2002 (Rel. 71, Created)
DT   19-SEP-2002 (Rel. 73, Last updated, Version 2)
XX
DE   Pseudoalteromonas haloplanktis xyl gene for endo-1,4-beta-xylanase
XX
KW   endo-1,4-beta-xylanase; xyl gene.
XX
OS   Pseudoalteromonas haloplanktis
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
XX
RN   [1]
RP   1-1281
RA   Collins T.;
RT   ;
RL   Submitted (14-JAN-2002) to the EMBL/GenBank/DDBJ databases.
RL   Collins T., Laboratory of Biochemistry, University of Liege, Institute of
RL   Chemistry, B6, Sart Tilman, B-4000 Liege , BELGIUM.
XX
RN   [2]
RX   DOI; 10.1074/jbc.M204517200
RX   PUBMED; 12089151.
RA   Collins T., Meuwis M.A., Stals I., Claeyssens M., Feller G., Gerday C.;
RT   "A novel family 8 xylanase, functional and physicochemical
RT   characterization";
RL   J. Biol. Chem. 277(38):35133-35139(2002).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1281
FT                   /organism="Pseudoalteromonas haloplanktis"
FT                   /strain="TAH 3a"
FT                   /mol_type="genomic DNA"
FT                   /country="Antarctica:Dumont D'Urville, Terre Adelie"
FT                   /isolation_source="Antarctic soil"
FT                   /db_xref="taxon:228"
FT   CDS             1..1281
FT                   /transl_table=11
FT                   /gene="xyl"
FT                   /product="endo-1,4-beta-xylanase"
FT                   /function="endohydrolysis of 1,4-Beta--D-Xylosidic linkages
FT                   in Xylans"
FT                   /EC_number="3.2.1.8"
FT                   /db_xref="GOA:Q8RJN8"
FT                   /db_xref="InterPro:IPR002037"
FT                   /db_xref="InterPro:IPR008928"
FT                   /db_xref="InterPro:IPR012341"
FT                   /db_xref="PDB:1H12"
FT                   /db_xref="PDB:1H13"
FT                   /db_xref="PDB:1H14"
FT                   /db_xref="PDB:1XW2"
FT                   /db_xref="PDB:1XWQ"
FT                   /db_xref="PDB:1XWT"
FT                   /db_xref="PDB:2A8Z"
FT                   /db_xref="PDB:2B4F"
FT                   /db_xref="UniProtKB/TrEMBL:Q8RJN8"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAD20872.1"
FT                   /translation="MKVFFKITTLLLILISYQSLAAFNNNPSSVGAYSSGTYRNLAQEM
FT                   GKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQSWG
FT                   MTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPA
FT                   PDGEEYFAFALLNASARWGNSGEFNYYNDAITMLNTIKNKLMENQIIRFSPYIDNLTDP
FT                   SYHIPAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHFTKVSGSPHWNLPTFLSRLDG
FT                   SPVIGYIFNGQANPGQWYEFDAWRVIMNVGLDAHLMGAQAWHKSAVNKALGFLSYAKTN
FT                   NSKNCYEQVYSYGGAQNRGCAGEGQKAANAVALLASTNAGQANEFFNEFWSLSQPTGDY
FT                   RYYNGSLYMLAMLHVSGNFKFYNNTFN"
FT   sig_peptide     1..63
FT                   /gene="xyl"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   mat_peptide     64..1278
FT                   /gene="xyl"
FT                   /product="endo-1,4-beta-xylanase"
FT                   /EC_number="3.2.1.8"
XX
SQ   Sequence 1281 BP; 439 A; 253 C; 252 G; 337 T; 0 other;
     atgaaagtat tttttaaaat aacaacttta ttgttaatac taataagcta tcaatcactt        60
     gctgcattta ataataaccc atcgagtgta ggcgcctaca gttcagggac ataccgtaac       120
     ctcgcacaag aaatgggtaa aacaaatata cagcaaaagg tgaatagtac ttttgacaat       180
     atgtttggct ataacaacac acaacaactt tactacccgt acaccgaaaa cggtgtttat       240
     aaagcacact acataaaagc aattaaccca gacgaaggcg acgatataag aacagaaggg       300
     caatcgtggg gaatgaccgc cgctgtcatg cttaataaac aagaagaatt tgataaccta       360
     tggcgctttg caaaagcgta tcaaaaaaat ccagacaatc accctgatgc taaaaaacaa       420
     ggcgtttacg cgtggaaact aaagcttaat caaaacggct ttgtttataa agtggatgag       480
     ggccccgctc ccgatggcga agagtacttt gcgtttgcac tacttaatgc ctctgctcgt       540
     tgggggaatt cgggtgagtt taactactac aacgatgcca ttaccatgtt aaacacaatt       600
     aaaaataagc tgatggaaaa ccaaataatc cgcttttcac cttacattga taacctaaca       660
     gacccttctt accatatacc tgcgttttac gactactttg caaataacgt aactaaccaa       720
     gcagacaaaa attactggcg acaagtagcc acaaaaagta gaaccttact taaaaaccat       780
     tttacaaaag taagtggtag cccgcattgg aacttaccta catttttatc gcgcttagat       840
     ggcagccctg ttattggcta catttttaac ggccaagcaa acccaggtca atggtatgaa       900
     tttgatgcat ggcgcgtaat tatgaatgtg ggtttagacg cgcatttaat gggtgctcaa       960
     gcgtggcata aaagtgcagt taataaagca ctgggctttt taagttatgc aaaaacaaac      1020
     aacagtaaaa actgttacga gcaagtgtat tcgtacggtg gagcgcaaaa cagaggctgt      1080
     gcaggcgaag gtcaaaaagc cgcgaatgca gtagcgttac ttgcttcaac aaatgctggg      1140
     caagcaaatg agttttttaa cgaattttgg tctttatcgc aaccaacggg tgactaccgt      1200
     tactataatg gttcgttata tatgttagct atgctgcatg tatcgggcaa ttttaagttt      1260
     tataacaaca cgtttaatta a                                                1281
//
spacer
spacer