 |
|
EBI DbfetchID AJ272430; SV 1; linear; genomic DNA; STD; PRO; 2830 BP. XX AC AJ272430; XX DT 03-JUN-2000 (Rel. 63, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Ruminococcus flavefaciens xynE gene for endoxylanase and esterase XX KW endoxylanase; esterase; xynE gene. XX OS Ruminococcus flavefaciens OC Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; OC Ruminococcus. XX RN [1] RC Revised by author 02-MAR-2000 RP 1-2830 RA Flint H.J.; RT ; RL Submitted (22-FEB-2000) to the EMBL/GenBank/DDBJ databases. RL Flint H.J., Gut Microbiology and Immunology, Rowett Research Institute, RL Greenburn Road, Bucksburn, Aberdeen, Scotland, AB21 9SB, UNITED KINGDOM. XX RN [3] RX PUBMED; 10846217. RA Aurilia V., Martin J.C., McCrae S.I., Scott K.P., Rincon M.T., Flint H.J.; RT "Three multidomain esterases from the cellulolytic rumen anaerobe RT Ruminococcus flavefaciens 17 that carry divergent dockerin sequences"; RL Microbiology (Reading, Engl.) 146:1391-1397(2000). XX FH Key Location/Qualifiers FH FT source 1..2830 FT /organism="Ruminococcus flavefaciens" FT /strain="No 17" FT /mol_type="genomic DNA" FT /db_xref="taxon:1265" FT CDS 185..2563 FT /transl_table=11 FT /gene="xynE" FT /product="endoxylanase" FT /function="cellulose degradation" FT /db_xref="GOA:Q9L3K3" FT /db_xref="HSSP:1F5J" FT /db_xref="InterPro:IPR018208" FT /db_xref="UniProtKB/TrEMBL:Q9L3K3" FT /protein_id="CAB93667.1" FT /translation="MKTKKIISGLLSAFIIASSMPAALSAYADDQQEKGNVGGYDWEMW FT NQNYTGTVSMKPSAGSFTCSWSGIENFLARMGKNYDSQKINYKALGDIVLSYDVEYTPR FT GNSYMCIYGWTRNPLMEYYIVEGWGDWEPPGNDGVDNFGTATIDGRTYKIRKSMRYNQP FT SIEGTKTFPQYWSVRTSSGSRNNTTNYMKDSVTVSAHFDAWSKAGLDMSGTLYEVSLNI FT EGYRSNGSANVKSITVGGDPPPPKEPVKADENGYYLKENFESGTGDWGARGSAKVESSS FT TGYDGSKGIYVSGRTNNWNGASIKLDTSTFVPGETYSLGAAVMQDSEASVDLKLTLQYT FT DANGKDNYDEVKTVSAAKGQWTDLSNGSYTIPADASGLELYIEAPDSLTDFYVDGAYAG FT VKGTKPLLSISNSTNPTDPTDPTNPTINTGIRGDVNEDGVIDSLDMIALRRGIIKIMSG FT GGIAPPNSDINGDGDVSVADLVALKRFILGIDKKFADPVTTTTVTTTKITTTTTTSTPA FT TGKNLNEQIRKDMPTSVPSGAEQSSQCKVEKKTYMCKFTGKQKSCNVILPPNYDPSKKY FT PVMYILHGIMGSENDMMQGFGTQGLMTGLMKSGQAEEFIAVTPNMFTSKTMSGPNGINQ FT QTCEQYDNFLYDISESLIPFIEENYPVKTGRENRAITGFSMGGREAIYIGLMRPDLFAY FT VGGACPAPGITPGSDTFMSHPGCMKESEMKFRDVGPEPNVFMITGGTNDGTVGTFPKQY FT SDILTRNGVDHVYQSIPGGQHGDNSVKPHLYTFFRYAFK" XX SQ Sequence 2830 BP; 820 A; 679 C; 640 G; 691 T; 0 other; ttcattctgt gttcaacacg tcacgcaatt ttagctatta tatataacag cacaaatttt 60 gacttgattt atattattta tatgtattat aatataaaca gataaaaaaa gggagaggaa 120 ttgtgcctct tcaggggatt gctaaaatca tgacattgct taattaaaca aaggagtgat 180 ttaagtgaaa acaaagaaaa taatcagcgg gctgctttca gcatttatta tcgcttcaag 240 tatgcctgca gctctttccg cttatgccga tgaccagcag gaaaaaggca acgtaggcgg 300 atacgactgg gagatgtgga atcagaacta tacaggtacg gtttccatga agcccagtgc 360 aggttccttt acctgctcat ggagcggtat cgagaacttc cttgcccgta tggggaagaa 420 ctatgactca cagaagatca attacaaggc tctgggcgac atcgtgctct cctatgacgt 480 tgagtacact ccccgcggta actcgtatat gtgtatttac ggctggacaa gaaatcccct 540 tatggaatac tatatcgttg aaggctgggg cgactgggag ccacccggaa atgacggcgt 600 agacaatttc ggtactgcaa ccatcgacgg aaggacctac aagatacgca agtctatgcg 660 ttacaatcag ccttccatcg agggtacaaa gacattcccg cagtactgga gcgtccgcac 720 ttcaagtggt tcacgcaaca atactacgaa ctacatgaag gacagcgtta ccgtttcggc 780 acactttgac gcatggagca aggctggcct tgacatgagc ggtactcttt acgaggtatc 840 actgaatatc gagggctaca gatccaacgg ttccgcaaac gttaagagta ttaccgtagg 900 cggtgatcct ccgcctccga aggagcccgt taaggctgac gagaacggct attatctcaa 960 ggagaacttc gagtccggta caggagactg gggtgcaaga ggttctgcaa aggtagagtc 1020 ttcaagcaca ggatatgacg ggtcaaaggg tatttatgta tcaggccgta caaataactg 1080 gaacggagct tccataaagc ttgatacctc cacattcgtg cccggcgaga cctacagtct 1140 cggtgctgct gtaatgcagg attccgaagc atcagttgac ttaaagctca cacttcagta 1200 tacagacgca aacggcaagg ataattacga tgaagtaaag actgtttctg ctgcaaaggg 1260 acagtggaca gatctttcaa atggttcata caccattcct gccgacgcat cgggacttga 1320 gctctatatc gaagctcccg acagtctcac tgacttctat gttgacggag cttacgctgg 1380 tgttaagggc acaaagcctc tgctcagcat ttcaaattca accaatccta ctgatcctac 1440 cgatcccaca aatcctacta tcaatacagg tatcagagga gatgtaaatg aggacggcgt 1500 tattgattca ctggatatga tcgctctcag acgcggaata attaaaatta tgtcaggcgg 1560 cggcattgca cctccgaact ccgatataaa cggtgacggc gacgtatctg tagctgatct 1620 tgttgcactc aagagattca tcctcggcat cgataagaaa ttcgctgatc ccgttactac 1680 aacaacagta acaacaacca agatcacaac aactacaact acttcaacac ctgcaaccgg 1740 caagaacctc aatgagcaga tcagaaagga tatgcctaca tctgtacctt caggcgcaga 1800 gcagagcagc cagtgcaagg tcgagaagaa gacctatatg tgtaaattca caggcaagca 1860 gaagagctgt aacgttatcc tgcctcctaa ctacgatccc agcaagaagt accctgttat 1920 gtacattctc cacggaatca tgggcagcga aaacgatatg atgcagggct tcggtactca 1980 gggacttatg accggtctta tgaagagcgg tcaggctgag gagttcatcg ctgttacacc 2040 taatatgttc acaagcaaga caatgagcgg ccccaacggc atcaatcagc agacctgtga 2100 acagtatgac aacttcctgt atgatatctc cgaaagtctt atccccttca tcgaggagaa 2160 ctaccctgtt aagacaggca gagagaacag agctatcacc ggcttctcaa tgggaggacg 2220 tgaagctatc tacatcggtc tcatgcgtcc cgacctcttt gcttatgttg gcggagcttg 2280 tcctgcaccc ggaatcactc ccggcagcga tacatttatg tcacatcccg gctgtatgaa 2340 ggaaagtgag atgaagttca gagacgtagg tcccgagcct aacgtattca tgatcacagg 2400 cggtacaaac gacggtaccg taggaacatt ccccaagcag tacagcgaca ttctcacaag 2460 aaacggtgtt gatcacgttt accagtccat tcccggaggc cagcatggtg acaacagcgt 2520 taagccacat ctctacacat tcttcagata tgctttcaag taagctgtca tgatatagta 2580 gaaataaaac agcgctctgt atgagcgctg tttttttatc gctttatgac cagatctgct 2640 ttttcggcag gtctgtactt atccgcataa aacctctcgg caggaaagta tctcttttca 2700 tatttctcac gtatagctgc ctcatctccg atatatccgt ccctcagaag cactctgcaa 2760 agtctctcct cttcaggaac atcgatatat atcatataat cgaataagcc gttcagctct 2820 tcacgctgaa 2830 // |
|