 |
|
EBI DbfetchID AJ272071; SV 1; linear; genomic DNA; STD; PRO; 1997 BP. XX AC AJ272071; XX DT 07-SEP-2000 (Rel. 65, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Zobellia galactanovora cgiA gene for iota-carrageenase CgiA and partial DE ORF2 XX KW cgiA gene; iota-carrageenase CgiA; ORF1; ORF2. XX OS Zobellia galactanivorans OC Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; OC Flavobacteriaceae; Zobellia. XX RN [1] RP 1-1997 RA Barbeyron T.; RT ; RL Submitted (18-FEB-2000) to the EMBL/GenBank/DDBJ databases. RL Barbeyron T., Station Biologique, UMR 1931, Centre National de la recherche RL Scientifique, Place Georges Teissier 29680 Roscoff, Bretagne, FRANCE. XX RN [2] RX DOI; 10.1074/jbc.M003404200 RX PUBMED; 10934194. RA Barbeyron T., Michel G., Potin P., Henrissat B., Kloareg B.; RT "iota-Carrageenases constitute a novel family of glycoside hydrolases, RT unrelated to that of kappa-carrageenases"; RL J. Biol. Chem. 275(45):35499-35505(2000). XX DR StrainInfo; 163368; Dsij. XX FH Key Location/Qualifiers FH FT source 1..1997 FT /organism="Zobellia galactanivorans" FT /strain="Dsij" FT /mol_type="genomic DNA" FT /country="France:Bretagne, Finistere" FT /db_xref="taxon:63186" FT stem_loop 77..123 FT /gene="cgiA" FT -35_signal 187..192 FT /gene="cgiA" FT /note="putative" FT -10_signal 210..215 FT /gene="cgiA" FT /note="putative" FT misc_signal 314..327 FT /gene="cgiA" FT /function="putative enhancer of translation" FT /note="similar to the Epsilon sequence" FT RBS 328..334 FT /gene="cgiA" FT /note="similar to the Omega sequence" FT CDS 333..1808 FT /transl_table=11 FT /gene="cgiA" FT /product="iota-carrageenase CgiA" FT /function="hydrolyses the b-1,4 linkages in the FT iota-carrageenan" FT /db_xref="HSSP:1H80" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012334" FT /db_xref="UniProtKB/TrEMBL:Q9F284" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAC07822.1" FT /translation="MKLQFKPVYLASIAIMAIGCTKEVTENDTSEISEVPTELRAAASS FT FYTPPGQNVRANKKNLVTDYGVNHNDQNDDSSKLNLAIKDLSDTGGILTLPKGKYYLTK FT IRMRSNVHLEIEKGTVIYPTKGLTPAKNHRIFDFASKTEEKIENASIVGKGGKFIVDLR FT GNSSKNQIVADVGNVTNFKISNFTIKDEKTIFASILVSFTDKAGNAWPHKGIIENIDQA FT NAHTGYGLIQAYAADNILFNNLSCTGGVTLRLETDNLAMKTAKKGGVRDIFATKIKNTN FT GLTPVMFSPHFMENGKVTIDDVTAIGCAYAVRVEHGFIEIFDKGNRASADAFKNYIEGI FT LGAGSVEVVYKRNNGRTWAARIANDFNEAAYNHSNPAVSGIKPGKFATSKVTNVKATYK FT GTGAKLKQAFLSYLPCSERSKVCRPGPDGFEYNGPSLGVTIDNTKRDNSLGNYNVNVST FT SSVQGFPNNYVLNVKYNTPKVCNQNLGSITSCN" FT sig_peptide 333..389 FT /gene="cgiA" FT /note="similar to a lipoprotein signal peptide" FT RBS 339..346 FT /note="ORF2" FT /note="similar to the Omega sequence" FT mat_peptide 390..1805 FT /gene="cgiA" FT /product="iota-carrageenase" FT /note="putative lipoprotein" FT /experiment="experimental evidence, no additional details FT recorded" FT misc_signal 1824..1830 FT /function="putative enhancer of translation" FT /note="ORF2" FT /note="similar to the Epsilon sequence" FT terminator 1830..1865 FT /gene="cgiA" FT /note="putative site of rho-independent transcriptional FT termination" FT CDS 1866..>1997 FT /transl_table=11 FT /product="hypothetical protein" FT /note="ORF2" FT /note="it is possible that cgiA and ORF2 form an operon" FT /db_xref="UniProtKB/TrEMBL:Q9F283" FT /protein_id="CAC07823.1" FT /translation="MSLSHVVIYWRLLIKAWISSGVNIGLAPSLPATIALCSYAQAKS" XX SQ Sequence 1997 BP; 633 A; 384 C; 434 G; 546 T; 0 other; ccctaaaaac tattcttcat accctttgat gtatacgttt aaactatagg gagttaatct 60 ggttttggtg caattctagt ttaataaatg aagccttctt ttttgactta cattttatta 120 acctcttgaa ttcttggggc ttgctaatta taaaatactt aatatcaggt ggttgtgtaa 180 aagaggtgga agggtatagg accgttactt ataattggcc cctgtcggaa ggggggttaa 240 aggtaaaata gtgtttaagt gtattaatta acttctatat aagtaggaaa atacactata 300 tattgcgaca ttattaacct taaattctta caatgaaatt acaatttaaa cctgtttatt 360 tagcgtcaat tgccataatg gcaataggat gcaccaaaga agtgacggaa aacgatacct 420 ccgaaatttc ggaagttcca actgaattga gggccgcggc ttcttcattt tataccccac 480 cgggtcagaa tgtacgggcc aataaaaaaa acctggtcac ggattacggt gttaaccaca 540 atgatcagaa cgatgatagt agcaaattaa acctggctat caaagattta tcggataccg 600 gtggtatact gacccttcct aagggaaagt actatttgac caaaattaga atgcgctcta 660 atgtacatct tgaaatagaa aagggaacgg taatctatcc gaccaagggg ttgactcctg 720 cgaagaatca cagaattttt gattttgcca gtaaaacaga ggaaaaaata gaaaacgcca 780 gtatagtggg taaaggaggt aagtttatag tagacctaag aggcaacagt tctaaaaacc 840 aaattgtagc cgatgttggt aacgtaacca actttaaaat atcgaatttt acgatcaagg 900 atgaaaaaac catctttgct tcgatattgg taagctttac ggataaggca ggcaatgctt 960 ggccacataa aggtattatt gagaatatag accaggcgaa tgcccatacg ggatatggcc 1020 tcatacaggc gtacgcggca gataacattc tgttcaacaa tctaagttgt acgggcgggg 1080 taaccttgcg tttagaaacc gacaacctcg ctatgaaaac cgctaaaaaa gggggggtaa 1140 gggatatttt tgccacaaag atcaagaata ccaatggctt gaccccggta atgttctctc 1200 cccattttat ggaaaacggt aaagtgacca tagatgatgt aaccgccatc ggttgtgcat 1260 atgccgtacg tgtagagcac ggttttatag agattttcga taaggggaat agggcaagtg 1320 ccgacgcttt caagaactat attgaaggta ttctaggagc tggctcggta gaagtcgtgt 1380 acaaacgtaa taacggaaga acatgggcgg cacgtatcgc aaacgacttt aacgaagcgg 1440 cgtataacca ctccaatcct gccgttagcg gaatcaaacc agggaaattc gccacatcta 1500 aggtaaccaa tgttaaggca acctataagg gtactggcgc caaactcaag caggcattct 1560 tatcctattt accctgttcg gaacgttcta aggtttgtcg gccaggtcca gatgggttcg 1620 agtataacgg accctccttg ggagttacca tcgataacac gaaaagggac aacagccttg 1680 gcaattataa cgtcaatgta agcacctcca gtgttcaggg ctttcccaat aattacgttt 1740 taaacgtaaa gtataatacc cctaaagtat gtaaccaaaa tctaggtagt attacttcgt 1800 gtaactgatc acgaaacaat ttgtaaataa aaagcagctg tcccttatta cgggcggctg 1860 cttttatgtc tttaagccat gtcgtgattt attggcgact tttgataaag gcttggattt 1920 cttccggggt aaatatcgga ttggcccctt ccctaccggc taccatagct ctatgctcct 1980 atgcacaggc gaaatct 1997 // |
|