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EBI DbfetchID AJ238780; SV 1; linear; genomic DNA; STD; PRO; 4597 BP. XX AC AJ238780; XX DT 10-MAR-2000 (Rel. 63, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Halomonas elongata betI, betB and betA genes and partial ORF1 XX KW betA gene; betaine aldehyde dehtdrogenase; betB gene; betI gene; KW BetI protein; choline dehydrogenase; ORF1; regulatory protein. XX OS Halomonas elongata OC Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; OC Halomonadaceae; Halomonas. XX RN [1] RP 1-4597 RA Nieto J.J.; RT ; RL Submitted (07-MAY-1999) to the EMBL/GenBank/DDBJ databases. RL Nieto J.J., Microbiology and Parasitology, University of Seville, Prof. RL Garcia Gonzalez s/n, Seville 41012, SPAIN. XX RN [2] RX PUBMED; 10708384. RA Canovas D., Vargas C., Kneip S., Moron M.J., Ventosa A., Bremer E., RA Nieto J.J.; RT "Genes for the synthesis of the osmoprotectant glycine betaine from choline RT in the moderately halophilic bacterium Halomonas elongata DSM 3043"; RL Microbiology (Reading, Engl.) 146:455-463(2000). XX DR CABRI; DSM 3043. XX FH Key Location/Qualifiers FH FT source 1..4597 FT /organism="Halomonas elongata" FT /strain="DSM 3043" FT /mol_type="genomic DNA" FT /db_xref="taxon:2746" FT -35_signal 556..561 FT -10_signal 580..585 FT CDS complement(<1..465) FT /codon_start=1 FT /transl_table=11 FT /note="ORF1" FT /db_xref="GOA:Q9L4K3" FT /db_xref="InterPro:IPR007210" FT /db_xref="UniProtKB/Swiss-Prot:Q9L4K3" FT /protein_id="CAB77173.1" FT /translation="MQQLSKRRLSALFVTAFLPVTAFASECSSVRFAEVGWTDITVTTA FT LASEVLEALGYEPRVDTVSVPIAYAGIRNNDFDVFLGNWMPSMASISDPYIERGEVERL FT VANLEGAKYTLAVPQYVYDAGVTSVNDLAEHADQFEQRIHGIEAGNDGNEL" FT CDS 659..1282 FT /transl_table=11 FT /gene="betI" FT /product="BetI protein" FT /function="putative regulatory protein" FT /db_xref="GOA:Q9L4K2" FT /db_xref="InterPro:IPR017757" FT /db_xref="UniProtKB/Swiss-Prot:Q9L4K2" FT /protein_id="CAB77174.1" FT /translation="MPKVGMEPIRRQQLIKATMAAIDEVGLAEATVMRIARHAGVSAGI FT ISHYFGGKDGLLEATMRQILTDLSDAVAARRHALEDDSPRAHIGAIIEGNFDRTQVTGP FT AAKTWLAFWASSMHKPVLQRLQYVNDRRLYANLCHQFQRVMPKADARNAARGLAAMIDG FT LWLRGALTPEGLDAAEARYLAHTYLDQLLTHYGCYQDASTADFK" FT CDS 1293..2762 FT /transl_table=11 FT /gene="betB" FT /product="putative betaine aldehyde dehtdrogenase" FT /db_xref="GOA:Q9L4K1" FT /db_xref="HSSP:1A4S" FT /db_xref="InterPro:IPR011264" FT /db_xref="UniProtKB/Swiss-Prot:Q9L4K1" FT /protein_id="CAB77175.1" FT /translation="MTAQSAQPLYIGGRPVDATSGETFTVTNPYDGSLLATIGQASQAD FT VDSAVQAAQRGQREWAAMTGMERSRILLRAVALLRERNDELAELETRNTGKPISETASV FT DIVTGADALEYYAGLAPAIEGSQIPLRDTRLVYTRREPLGVIGAIGAWNYPIQIACWKA FT APALAAGNAIVFKPSEVTPLTALKLAEIFTEAGLPDGVFNVVQGDGRVGAMLTEHEGIA FT KVSFTGEVGTGKKVMAAAGGSTLKDVTMELGGKSPLIVFADADLDRAADAAMMANFYSS FT GQICTNGTRVFVERSAKEAFEAKLVERVARIKAGDPMDPSVNFGPLVSFEHQEKVLSYI FT ALGKEQGARVLAGGDAWNSGEWAKGAWAAPTVFTDCTDEMRVVKEEIFGPVMSVLAFDD FT EEEVIRRANNTKYGLAAGVFSESLNRAHRVIHQLEAGICWINTWGESPSEMPVGGYKES FT GIGRENGVETLNHYTQTKSVQIEMGPFESVF" FT CDS 2818..4494 FT /transl_table=11 FT /gene="betA" FT /product="putative choline dehydrogenase" FT /db_xref="GOA:Q9L4K0" FT /db_xref="InterPro:IPR007867" FT /db_xref="UniProtKB/Swiss-Prot:Q9L4K0" FT /protein_id="CAB77176.1" FT /translation="MSQATEFDYIIIGAGSAGNVLATRLTEDSDVSVLLLEAGGPDYRF FT DFRTQMPAALAYPLQGKRYNWAFETDPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGN FT ALDYDHWAKQPGLEEWDYLSCLPYFKKSETRDIGPNDYHGGDGPVSVTTPKAGNNPLYR FT TFIEAGKQAGYPETEDVNGYQQEGFGPMDRFVTPKGRRASTARGYLDTAKQRSNLTIET FT RAVTDVIEFEGKRAVGVRYEQKGQPKQARARREVLLCGGAIASPQILQRSGVGNPEWLK FT ELGIPVVHELPGVGENLQDHLEMYIQYECKEPISLYPALKWYNQPKIGAEWLFKGTGVG FT ASNQFESCGFIRSRDDEEWPNLQYHFLPIAISYNGKSAVQAHGFQAHVGSMRSESRGRI FT RLTSKDPHAAPSILFNYMAKEKDWEEFRDAIRLTREIIAQPAFDRYRGREISPGPDVQS FT DEELDNFVKQHAETAYHPCGSCRMGEGDMAVTDAQGRVHGLEGLRVVDASLFPVIPTGN FT LNAPTIMLAEKIADRIRGREPLPRASVDYYVANGAPAKQAS" FT terminator 4531..4561 XX SQ Sequence 4597 BP; 1053 A; 1377 C; 1270 G; 897 T; 0 other; gagctcgtta ccgtcgttcc ctgcttcaat accgtgaatg cgctgctcaa actgatctgc 60 gtgctcggct aaatcattaa cggaggtcac gccagcgtca tacacatact gcggcacggc 120 gagggtgtac ttagcccctt cgagattcgc gaccaaacgc tctacttcac cacgctcaat 180 gtacggatcg ctgatcgatg ccatcgatgg catccaatta cccaaaaaca catcaaaatc 240 attgttgcgt atccctgcat aagcgatggg caccgagaca gtatccacgc ggggctcgta 300 gcccagcgct tccagcactt cactcgccag cgccgtggtc accgtaatat cggtccagcc 360 cacctcagca aaacgtacgc tactacattc actcgcgaag gccgtcaccg gtaaaaaagc 420 agtgacgaat agagcactta aacgacgttt agatagctgt tgcatacata tttccctcgt 480 tgtctgttgt attgatacgc cctctgcaaa cggtcgatgc aggagtaaga aaccagcaga 540 cacactttta ttgattgagc gttcaataaa aaaatgccat tatattcagg taaccatgcc 600 tactcctgct tttcaaggcg aggagccaat gggcattcaa cgtcattagg agatagctgt 660 gcctaaggtg ggaatggaac caatacgccg ccagcagtta atcaaggcta cgatggcggc 720 cattgatgag gttggccttg ccgaagcgac ggtcatgcgc atcgcccgtc acgcgggggt 780 ttccgcaggc attatcagcc actactttgg cggtaaagat ggcctgctcg aagccacgat 840 gcgacaaatt ttgacggact taagcgatgc cgtcgccgcg cggcgccatg ccttagaaga 900 cgattcaccg cgtgcgcaca ttggcgccat tattgaaggc aactttgatc gcacccaggt 960 caccggaccc gccgctaaga cgtggttagc cttctgggcc agcagcatgc acaagcccgt 1020 acttcagcgg cttcagtatg tgaacgaccg tcgtctttac gccaacctat gtcatcaatt 1080 tcaacgtgtc atgcccaaag cggatgcccg caacgccgct cgtggcctag ccgccatgat 1140 cgatggttta tggctgcgcg gtgcgttaac gcctgaaggc ctggatgccg cagaagcgcg 1200 ctatcttgcg cacacctatc tcgaccagtt actgactcat tacggatgct atcaagacgc 1260 atccactgcc gattttaaat aaggagatca acatgaccgc tcaaagcgca caacccctct 1320 atattggtgg tcgcccggtt gatgccacct ccggcgaaac atttaccgtt accaatcctt 1380 atgatggcag tctgctggcc acgattggtc aggcaagcca agccgatgtc gatagcgccg 1440 ttcaggcagc acagcgtggc cagcgtgaat gggccgccat gaccggcatg gagcgctcac 1500 gcatcctgct acgtgccgta gcacttcttc gcgagcgtaa tgacgagctt gccgagctgg 1560 aaacccgcaa taccggcaag ccgatcagcg aaaccgccag cgtcgatatc gtgaccggtg 1620 ccgatgctct ggagtactac gcaggccttg ccccggccat tgagggcagc caaattcccc 1680 tgcgcgatac tcggcttgtt tacacccgcc gcgagccgct aggtgtgatc ggcgccattg 1740 gtgcctggaa ctacccgatt caaatcgcct gctggaaagc ggctccggca ctcgccgctg 1800 gcaacgccat cgtgttcaag cccagtgaag tcacaccgct aacggcgctt aagcttgccg 1860 aaatcttcac tgaagcaggc ttgcccgacg gtgtatttaa cgtggtacag ggcgatggtc 1920 gcgtcggcgc catgctgacc gagcacgaag gcattgccaa agtctcgttt accggtgaag 1980 tgggcacagg caaaaaagtc atggccgctg ccggtggttc cacgctgaaa gacgtaacaa 2040 tggaactcgg cggcaaatct ccgctaattg tcttcgcgga tgccgacctc gaccgcgcag 2100 ccgatgccgc catgatggcg aacttctact ccagcggcca aatctgcacc aacggcactc 2160 gcgtgttcgt tgagcgcagc gctaaagagg cgttcgaagc caagctagta gagcgcgtgg 2220 cacgcatcaa agcaggcgac ccgatggatc cgagcgtcaa tttcggtccg cttgtcagct 2280 tcgagcatca ggaaaaagtg ctctcctaca tcgcgctcgg caaagagcaa ggcgcacgcg 2340 tgctggccgg tggcgacgcg tggaacagcg gcgaatgggc caaaggcgcc tgggcggccc 2400 ccacggtatt cactgactgc accgacgaga tgcgtgtcgt caaagaggag atctttggcc 2460 cggtaatgtc agtactcgcc ttcgacgacg aagaggaagt catccgccgc gccaacaaca 2520 ccaagtacgg cctagccgcc ggcgtcttca gcgaaagcct gaaccgcgcg caccgtgtga 2580 ttcaccagct ggaagccggc atctgctgga tcaacacctg gggagagtcg ccgtcggaga 2640 tgccggtagg cggttacaag gagtcgggca ttggtcgcga gaacggcgtc gagacgctca 2700 atcactacac ccagaccaag tccgtacaga tcgagatggg gccgttcgag tcggtgtttt 2760 aaaggctgag cccagctttc gtacaccgaa ctcccctttc tggatgagag aaccgctatg 2820 tctcaagcaa ctgagtttga ttacattatc atcggtgccg gttcagcagg taacgtgctg 2880 gccacgcgcc tgaccgaaga cagcgatgtc agcgtgctgc tgttggaagc cggtggccct 2940 gactaccgtt tcgattttcg cacccaaatg cccgcagcgt tggcttaccc actacagggc 3000 aagcgttata actgggcgtt cgaaaccgac cccgaacctc atatggacaa tcgccgtatg 3060 gagtgcgggc gtggcaaagg cctaggcggc tcctcgctga tcaacggtat gtgctacatc 3120 cgcggcaacg cgcttgatta cgaccactgg gccaaacagc ccggtttgga ggagtgggat 3180 tatttaagct gtctgcccta cttcaaaaag agcgaaaccc gcgatatcgg cccgaacgac 3240 taccacggtg gcgacgggcc cgtcagcgtg accactccca aagcgggcaa taacccgctt 3300 taccgcactt ttatagaggc gggcaagcaa gccggttacc cagaaaccga ggacgtcaac 3360 ggctaccaac aagagggctt cggcccgatg gaccgcttcg taacgccgaa aggtcgccgc 3420 gcctccaccg ctcgtggcta cctggacacg gccaaacagc gcagtaacct gaccatcgaa 3480 acccgcgccg tcaccgacgt gatcgaattc gagggtaagc gcgccgtcgg cgtccgctac 3540 gagcagaaag gccagcccaa gcaggctcgc gcgcgtcgcg aagtgctgct gtgcggtggt 3600 gcgattgcct ccccgcaaat tctccagcgc tctggcgtag gtaacccaga gtggctgaaa 3660 gagctgggca ttcctgtcgt acatgaactg cccggcgtcg gcgaaaacct gcaagaccat 3720 ctggagatgt acattcagta cgagtgcaag gagcccattt cgctctaccc ggcgctgaag 3780 tggtacaacc agccaaaaat cggtgcagag tggctgttca aaggcactgg tgtgggcgca 3840 agcaaccagt tcgagtcctg tggcttcatc cgtagccgcg atgacgagga gtggccgaac 3900 ctgcagtacc acttcctgcc tatcgccatt agctataacg gcaagagtgc cgttcaagcg 3960 catggcttcc aggcacacgt cggttccatg cgttcagaaa gccgcggccg tattcgtctg 4020 acatctaaag acccccacgc ggcaccgagc attctgttca attacatggc caaagagaag 4080 gattgggaag agttccgcga cgcgattcgc ctaactcgcg agatcatcgc ccagcccgcc 4140 ttcgaccgat accgaggccg ggaaatttcc cccggcccgg acgtgcagag cgatgaagag 4200 ctcgacaatt tcgtcaagca gcacgccgaa actgcttatc acccctgcgg cagctgccgc 4260 atgggcgaag gtgacatggc ggtgaccgat gcccaaggcc gggtacatgg gctcgaagga 4320 ctgcgcgtgg tggatgcatc actatttccg gtcattccaa ccggcaacct gaatgctccc 4380 accatcatgc tggccgaaaa aatcgccgac cgtattcgcg gtcgcgagcc cctgccccgt 4440 gccagcgtag attactacgt cgccaacggc gcgcctgcca aacaggcatc gtagcctgag 4500 acgagtgcgg gcttatcgac ccgctgcgtc aaaacgccat ggttccgcgc catggcgttt 4560 tttatgtctt aactgcgcta cattgaagat ataaagc 4597 // |
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