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EBI DbfetchID AJ238308; SV 1; linear; genomic DNA; STD; PRO; 3414 BP. XX AC AJ238308; XX DT 20-APR-1999 (Rel. 59, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 3) XX DE Bordetella pertussis partial gene for putative thioesterase, tRNA-Gly, DE murB, dapB, omlA genes and partial fur gene XX KW dapB gene; dihydrodipicolinate reductase; ferric ion uptake regulator; KW fur gene; murB gene; omlA gene; outer membrane lipoprotein; thioesterase; KW transfer RNA-Gly; tRNA-Gly gene; KW UDP-N-acetylenolpyruvoylglucosamine reductase. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [1] RP 1-3414 RA Pradel E.; RT ; RL Submitted (13-APR-1999) to the EMBL/GenBank/DDBJ databases. RL Pradel E., U447, Inserm, Institut Pasteur de Lille, BP 245, 59019 Lille RL cedex, FRANCE. XX RN [2] RA Pradel E.; RT ; RL Unpublished. XX DR RFAM; RF00005; tRNA. XX FH Key Location/Qualifiers FH FT source 1..3414 FT /organism="Bordetella pertussis" FT /strain="TohamaI" FT /isolate="BPSM" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS <1..184 FT /codon_start=2 FT /transl_table=11 FT /product="putative thioesterase" FT /db_xref="UniProtKB/TrEMBL:Q9X6Y7" FT /protein_id="CAB41010.1" FT /translation="SSTLVMAARDDLVMPAWFAQSAAASISDARLIVLGEGGHMFPETR FT TEEFLSLVLPFLRRA" FT terminator 207..238 FT /partial FT tRNA 240..319 FT /gene="tRNA-Gly" FT /product="transfer RNA-Gly" FT CDS 503..1558 FT /transl_table=11 FT /gene="murB" FT /product="UDP-N-acetylenolpyruvoylglucosamine reductase" FT /function="peptidoglycan synthesis" FT /EC_number="1.1.1.158" FT /db_xref="GOA:Q9X6Y8" FT /db_xref="InterPro:IPR003170" FT /db_xref="InterPro:IPR006094" FT /db_xref="InterPro:IPR011601" FT /db_xref="InterPro:IPR016166" FT /db_xref="InterPro:IPR016167" FT /db_xref="InterPro:IPR016169" FT /db_xref="UniProtKB/Swiss-Prot:Q9X6Y8" FT /protein_id="CAB41011.1" FT /translation="MSTVPARIEPVAPLAPQAQDLRCFNTLGLASHAPAFVALTEPSQL FT PALSALAPRFRQLVVLGGGSNVVLPASIDGLVAQVRLPGVRLVGQCADAWVVEAAAGEN FT WHGFVTACVDNGWDGLENLALIPGTVGAAPVQNIGAYGVELADRFHSLTAWDVKGGRWV FT EMGAAECRFAYRDSFFKHQEPGAWVIGSVRFALPRPWQPVLDYPDLQRHAALDGAAPTA FT RAVYDAVCAIRRAKLPDPAVVGNAGSFFKNPLVDAGTRQALLGRFPGLVSYPQPDGRYK FT LAAGWLIDQCGWKGRQLGAAGVHDRQALVLVNRGGAQARDIMALAAAIQGDVERRYGVR FT LEPEPVVVPAR" FT CDS complement(1595..2404) FT /transl_table=11 FT /gene="dapB" FT /product="dihydrodipicolinate reductase" FT /function="diaminopimelate and lysine biosynthesis" FT /EC_number="1.3.1.26" FT /db_xref="GOA:Q9X6Y9" FT /db_xref="InterPro:IPR000846" FT /db_xref="InterPro:IPR011770" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q9X6Y9" FT /protein_id="CAB41012.1" FT /translation="MTQATPQRIAIAGASGRMGQMLIEAVLDTEGVELAVALDRAGSPS FT IGQDAGAALGRPCGVTITDQLDALAQADCLIDFTRPEGTLQHLQACLRHDVKMVIGTTG FT FDSSGRAEIKVAAQKIAIVFAPNMSVGVNATLKLLDMAARILNSGYDVEIFEAHHRNKV FT DAPSGTALIMGETVASAWDVALPDVATWTRHGDTGVRKPGTIGFSVVRGGDIVGDHTVF FT FCGTGERIEISHRSSSRATYAQGAVRAARFLARQDNGLYDMQAVLGL" FT CDS complement(2405..2953) FT /transl_table=11 FT /gene="OmlA" FT /product="putative outer membrane lipoprotein" FT /db_xref="GOA:Q9X6Z0" FT /db_xref="InterPro:IPR007450" FT /db_xref="UniProtKB/TrEMBL:Q9X6Z0" FT /protein_id="CAB41013.1" FT /translation="MIARISLRPLKGLAVAVLAASALTACSSGKWGFPYKAGVQQGNWI FT TKEQVALLQQGMSREQVRFALGSPTLTSVLHADRWDYPYYFKPGYGKAQERQFTVWFEN FT DHLVRWSGDEQPDLQPFQIEKVNAKQEEKADAQVDTAEKRQEGIDKAEKVRPHVDVTTP FT DNPTLDYPGEPGQTFEPLK" FT CDS 3104..>3414 FT /transl_table=11 FT /gene="fur" FT /product="ferric ion uptake regulator" FT /db_xref="GOA:Q9S6N2" FT /db_xref="HSSP:1MZB" FT /db_xref="InterPro:IPR002481" FT /db_xref="UniProtKB/TrEMBL:Q9S6N2" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAB41014.1" FT /translation="MSDQSELKNMGLKATFPRLKILDIFRKSDLRHLSAEDVYRALIAE FT NVEIGLATVYRVLTQFEQAGILTRSQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDP FT " XX SQ Sequence 3414 BP; 531 A; 1066 C; 1170 G; 647 T; 0 other; gagctcgacg ctggtgatgg ccgccaggga cgatctcgtg atgcccgcgt ggtttgcgca 60 gtctgccgcg gcatcgataa gcgatgcgcg cctcatcgtg ctcggcgaag gagggcatat 120 gttcccggaa acccgcaccg aggaattcct ttcgctggtg ctgccctttt tgcggcgggc 180 ttgagccagg acgctcatgc aaaaacaaaa aggcccaaac cgaagtttgg gccttttttg 240 aatctggagc gggaaacgag tctcgaactc gcgacctcaa ccttggcaag gttgcgctct 300 accaactgag ctattcccgc gaaatactgc ctggttctcg ccgatgccta ggcaaatgtc 360 atgttgctgc catctgccgc tctcatcgcg agccgcgcat tctacatgag ttcttcgagt 420 ttgtcgcgcc tggtgaaagc gctactcaaa ttcttgtgta agatgagcga agacaaaaac 480 tatagcataa ccaaccgtgt ccatgtcaac tgttcctgcc cgtatcgagc ccgtcgcgcc 540 cctggcgccc caggcgcagg atttgcgttg tttcaacacc ctgggcctgg cgtcccacgc 600 accggccttt gtcgcgctga ccgagccctc gcagctgccg gcgctgtcgg cgctggcgcc 660 gcgctttcgc cagctggtgg tgctgggcgg cggcagcaac gtggtgttgc ccgccagcat 720 cgacggcctg gtggcgcagg tgcgcctgcc tggcgtgcgc ctggtggggc agtgcgccga 780 cgcctgggtc gtcgaagccg cggcgggcga gaattggcac ggtttcgtca cggcctgcgt 840 cgacaatggc tgggacgggc tggagaacct ggccctgatc ccgggcacgg tcggggccgc 900 accggtgcag aacatcggcg cctacggcgt cgagctggcc gatcgcttcc acagccttac 960 ggcctgggac gtcaagggcg ggcgctgggt ggagatgggc gccgccgaat gccgctttgc 1020 ctatcgcgac agtttcttca agcaccagga gccgggcgcc tgggtgatcg gctcggtgcg 1080 attcgcgctg ccgcggccct ggcagccggt gctggactat cccgacctgc agcggcatgc 1140 cgcgttggac ggcgccgcgc cgaccgcccg cgccgtgtat gacgcggtgt gtgcgatccg 1200 gcgcgccaag ctgcccgatc ccgccgtggt gggcaatgcc ggcagctttt tcaagaatcc 1260 cttggtggac gcgggcacgc ggcaggcgct gcttggccgt ttccccggcc tggtttcgta 1320 tccgcagccc gatggccgct acaagctggc cgccggctgg ctgatcgatc aatgcgggtg 1380 gaaggggcgc cagctgggcg ccgcgggcgt gcacgatcgg caggcgctgg tgctggtcaa 1440 tcgaggcggc gcgcaggcgc gcgacatcat ggcgctggcg gccgccatcc agggcgacgt 1500 cgagcggcgc tatggagtga ggctcgagcc cgagccggtc gtggtgccgg cccgctgaag 1560 gcgggcgcgg catggcgccg cgccgccgcc tggcttacag gcccagtacg gcctgcatgt 1620 cgtacaggcc gttgtcctgg cgcgccagga agcgcgccgc gcgcacggcg ccctgcgcgt 1680 acgtggcgcg gctgctggaa cggtgcgaga tctcgatgcg ttcgcccgtg ccgcagaaga 1740 acaccgtgtg atcgccgacg atgtcgccgc cgcgcaccac cgagaaaccg atggtgccgg 1800 gcttgcgcac cccggtgtcg ccgtggcggg tccacgtggc gacgtcgggc agggcgacgt 1860 cccaggccga agccaccgtc tcgcccatga tcagggccgt gcccgagggc gcgtcgacct 1920 tgttgcggtg gtgcgcctcg aagatctcga cgtcgtaccc cgagttgagg atgcgcgcgg 1980 ccatgtccag cagcttgagg gtggcattga cgcccacgct catgttgggg gcgaagacga 2040 tggcgatctt ctgggcggcg accttgattt cggcgcggcc gctgctgtcg aagccggtgg 2100 tgccgatcac catcttcacg tcatgcctga ggcaggcctg caggtgctgc agcgtgcctt 2160 cgggccgggt gaagtcgatc aggcagtcgg cctgcgccag ggcgtcgagc tggtcggtga 2220 tggtgacgcc gcaggggcgc cccaacgcgg cgcccgcgtc ctggccgatc gagggcgagc 2280 cggcgcggtc cagcgctacg gccagttcga cgccctcggt gtcgaggacg gcttcgatca 2340 gcatctggcc catgcggccg ctggcgcccg cgatggcgat gcgctggggg gtggcttgcg 2400 tcatttactt gagcggttcg aaggtttggc ccggctcgcc cgggtagtcg agggtggggt 2460 tgtccggcgt cgtgacatcg acatggggcc ggactttttc agccttgtcg atgccttcct 2520 ggcgcttctc ggccgtatcc acctgggcgt cggctttttc ttcctgtttg gcgttcactt 2580 tctcgatctg gaacggctgg aggtcgggct gttcatcccc gctccagcgt accaggtggt 2640 cgttctcgaa ccacacggtg aactggcgtt cctgcgcctt gccgtagccg ggcttgaagt 2700 agtaggggta atcccagcga tcggcgtgca gcacgctggt cagcgtgggg ctgcccaggg 2760 cgaagcgcac ctgttcgcgc gacatgcctt gctgcagcag ggcgacctgc tctttggtga 2820 tccagttgcc ttgctggacg ccggccttgt aggggaatcc ccatttgccg gacgagcagg 2880 cggtcagggc ggaggctgcc aggacagcca ccgcgagccc cttcagaggc cgcagggaaa 2940 tacgtgcgat catggacact agcgccccta ttattggaaa cggataaaac cgttatcata 3000 aaggtttcat aacgatagtt ccgtggggca gcgggtgatg gctacgctgg cttgcgtcga 3060 ccatcgaccc cccatgccac cgcggatgga gagcgattac accatgagcg accaaagcga 3120 actgaaaaac atgggcctga aggcgacgtt tccccgcctg aagatccttg acatttttcg 3180 taaatccgac ctccgccacc tcagcgcgga agatgtctat cgcgcgctga tcgccgagaa 3240 tgtggaaatc gggctggcga cggtatatcg cgtgctgacg cagttcgagc aggcgggcat 3300 cctcacgcgt agccagttcg ataccggcaa ggcggtgttc gagctgaatg atggcgatca 3360 ccacgatcac ctcatctgca ccaattgcgg tacggtattc gagttttcgg atcc 3414 // |
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