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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AJ237980; SV 1; linear; genomic DNA; STD; PRO; 1214 BP.
XX
AC   AJ237980;
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DT   13-APR-1999 (Rel. 59, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 5)
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DE   Bacillus sp. pelA gene for pectate lyase, strain BP-23
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KW   pectate lyase; pelA gene.
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OS   Paenibacillus barcinonensis
OC   Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus.
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RN   [1]
RP   1-1214
RA   Pastor F.I.J.;
RT   ;
RL   Submitted (12-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Pastor F.I.J., Microbiology, Faculty of Biology, University of Barcelona,
RL   Av. Diagonal 645, 08028 Barcelona, SPAIN.
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RN   [2]
RX   PUBMED; 10658655.
RA   Soriano M., Blanco A., Diaz P., Pastor F.I.J.;
RT   "An unusual pectate lyase from a Bacillus sp. with high activity on pectin:
RT   cloning and characterization";
RL   Microbiology (Reading, Engl.) 146:89-95(2000).
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FH   Key             Location/Qualifiers
FH
FT   source          1..1214
FT                   /organism="Paenibacillus barcinonensis"
FT                   /strain="BP-23"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:198119"
FT   -35_signal      39..44
FT                   /gene="pelA"
FT   -10_signal      62..67
FT                   /gene="pelA"
FT   RBS             80..85
FT                   /gene="pelA"
FT   CDS             95..763
FT                   /transl_table=11
FT                   /gene="pelA"
FT                   /product="pectate lyase"
FT                   /function="pectate degradation"
FT                   /EC_number="4.2.2.2"
FT                   /db_xref="GOA:Q9X6Z2"
FT                   /db_xref="HSSP:1EE6"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9X6Z2"
FT                   /protein_id="CAB40884.1"
FT                   /translation="MKKMLTLLLSAGLVASIFGVMPAAAAPTVVNSTIVVPKGTTYDGQ
FT                   GKTFVANPSTLGDGSQAENQKPVFRLEAGATLKNVIIGAPAADGVHCYGSCNISNVVWE
FT                   DVGEDALTLKSSGTVNITGGAAYKAYDKVFQMNASGTINIKNFRADDIGKLVRQNGGTS
FT                   YAVNMTLDNSNISNVKDSIMRTDSSVSQGKITNTRYSKVPTLFKGFASGKTSQSGNTQY
FT                   "
FT   sig_peptide     95..169
FT                   /gene="pelA"
FT   mat_peptide     170..760
FT                   /gene="pelA"
FT                   /product="pectate lyase"
FT                   /EC_number="4.2.2.2"
XX
SQ   Sequence 1214 BP; 329 A; 272 C; 306 G; 307 T; 0 other;
     tcaggctccg tacaaggggt gagcccgcag ggtgcctgta gacaagccag cggcttgttt        60
     atcaaattac ttaaattaag ggaggatgtt gatgatgaaa aaaatgttaa cgctcttgct       120
     gtctgccggt cttgttgctt ccatatttgg tgtaatgcct gccgcggctg cgccaaccgt       180
     cgtcaattca acgatcgttg taccgaaggg cacgacctat gatggacagg ggaaaacctt       240
     tgtagcgaat ccctctacat taggtgacgg ttctcaagcg gagaatcaga agcctgtatt       300
     ccggctggaa gcaggggcaa ctttgaaaaa tgttattatt ggtgcacccg cagcggatgg       360
     tgtgcattgt tacggcagct gtaatatttc caacgttgta tgggaagatg taggcgagga       420
     tgcattgaca ctgaaatcat caggaaccgt taatattacc ggcggagcag cgtataaggc       480
     ttacgataaa gtgtttcaga tgaacgcttc gggtacgatt aatatcaaaa acttccgtgc       540
     ggatgatatc ggcaagctgg tgcggcaaaa tggaggaacc tcctatgcgg ttaacatgac       600
     actggataat tccaacatat ccaacgtgaa ggattccatt atgcgcacgg acagcagtgt       660
     atctcaaggg aagatcacga acacacgtta ctccaaagtg ccaacgctgt tcaagggctt       720
     tgcttcaggc aagacgagcc agtccggaaa tacacagtat taacgcacgc ttgcagtaaa       780
     aaataaagaa gcggctgaag ttcaagtacc acctgctcag ccgttgagga gaaccaaata       840
     aaacgggatg aaccagtcaa catggcctca tcccgttttg atttggtttg tttggttaca       900
     gccatgaatc tgtatccata tcgaattact tctctccagg cacctcaacg aacagtttgc       960
     cttgggatgg agcagcagaa ccgctatcca aggagccgga tttgttcatg atctcataag      1020
     cggtttcctc cagcatgcga gaatatttga aggataccag cgtttttccg gctacagatg      1080
     gacgggttcc tgcctcggca acgggttttg ccttgataaa gaacaggtca ccaatggttc      1140
     cggcttgttt gctcagattg gcttgccatt tcaacagtgc atttccgttc tccatcgtat      1200
     aataactgac caga                                                        1214
//
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