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EBI DbfetchID AJ005163; SV 1; linear; genomic DNA; STD; VRL; 8359 BP. XX AC AJ005163; XX DT 27-MAY-1998 (Rel. 55, Created) DT 27-MAY-1998 (Rel. 55, Last updated, Version 1) XX DE Fowlpox virus genomic region homologous to D6R to A1L region of vaccinia DE virus. XX KW mRNA capping enzyme; rifampicin resistance; RNA polymerase. XX OS Fowlpox virus OC Viruses; dsDNA viruses, no RNA stage; Poxviridae; Chordopoxvirinae; OC Avipoxvirus. XX RN [1] RP 1-8359 RA Skinner M.A.; RT ; RL Submitted (21-MAY-1998) to the EMBL/GenBank/DDBJ databases. RL Skinner M.A., Division of Molecular Biology, Institute for Animal Health, RL Compton, Newbury, Berks., RG20 7NN, UK. XX RN [2] RA Skinner M.A.; RT ; RL Unpublished. XX CC Related entry: J. Gen. Virol. 71:2873-2881(1990). XX FH Key Location/Qualifiers FH FT source 1..8359 FT /organism="Fowlpox virus" FT /strain="HP-440" FT /isolate="FP9" FT /mol_type="genomic DNA" FT /db_xref="taxon:10261" FT CDS <1..166 FT /codon_start=2 FT /gene="fp-d6" FT /product="FP-D6" FT /function="early transcription factor subunit" FT /db_xref="UniProtKB/TrEMBL:O72906" FT /protein_id="CAA06397.1" FT /translation="IEKITDDHFFVTNKVFEKSLLYKHKNDIIVVPFNLLFTEYSWMIN FT FRKELNVVV" FT CDS 222..638 FT /gene="fp-d7" FT /product="FP-D7" FT /function="RNA polymerase subunit" FT /db_xref="GOA:P21967" FT /db_xref="InterPro:IPR004973" FT /db_xref="UniProtKB/Swiss-Prot:P21967" FT /protein_id="CAA06398.1" FT /translation="MDNIKKAVINKYLHKETSGFMAKKIQIVEDTPMPLAELVNNEIVV FT HVTCNIDYKYYKVGDIVSGILTITDESDISVVCSDLICKIRSDSGTVSYDNSKYCFIKN FT GKVYANESTVTVMLKEAQSGMESSFVFLGNIIEK" FT CDS 802..1629 FT /gene="fp-(d8)/Y" FT /product="Y" FT /db_xref="InterPro:IPR003599" FT /db_xref="UniProtKB/Swiss-Prot:P21975" FT /protein_id="CAA06399.1" FT /translation="MICKNSIRHKELTLIIFLCFIYLSKTFVEVKAPPYVLVPEGSDIN FT LTCFIKDDQGAGEDKVIVAWQQGDGEVTQGIKTTWDTTRQVGQTMLHISKVSKEAEGSY FT MCVVWINGDADYKKMNLGVFTVSKKTYMHNEVSITPRRSRVDMSDGRPLKIECAFSTRR FT IYGRSQVNIKWWKIDGITRKWEQQTSGVNLLLHTYGGIGSLSIPNPTTGESTGKYMCVV FT TCGDIGNVGFRLVKSLSPLSDTESDHSYTSEEGSHFMERCKVKKSPYGGWIVE" FT CDS 2552..3229 FT /gene="fp-d10" FT /product="FP-D10" FT /db_xref="GOA:P32817" FT /db_xref="InterPro:IPR003301" FT /db_xref="UniProtKB/Swiss-Prot:P32817" FT /protein_id="CAA06400.1" FT /translation="MGEYYKNKLLLRPSVYSDNIQKIKLVAYEYGKLHAKYPLSVIGIM FT KTIDDKFVLCHRYNSFLFSEIAFTKDKRRKIRLFKKYSKYMSNIERDILSYKLSLPNNY FT NTNHIDIIFPGGKIKDLESITNCLVREIKEELNIDSSYLAICKNCFVYGSIYDRLIDKD FT FEVIALYVETDLTSRQILNRFIPNREIKGISFIDARDINKDYLYTNVIKYIINAVRTSA FT SNS" FT CDS complement(3233..5146) FT /gene="fp-d11" FT /product="FP-D11" FT /function="NPH-I" FT /db_xref="GOA:O72907" FT /db_xref="InterPro:IPR000330" FT /db_xref="UniProtKB/Swiss-Prot:O72907" FT /protein_id="CAA06401.1" FT /translation="MNTYAAYIDYALKKLDTFPVDMTGGNDNTVLLKDYQLFVAKVFLG FT LNSMNSILLFQETGVGKTITTVYMLKNLKKIYSEWTIIILVKKALIDDPWTHTILDYAP FT EVMKDCIIMNYDDQNFHNKFFTNIKSINVKSRIFIIIDECHNFISKSLTKEDNKKRNTK FT LVYNYIAKNLMQKNNKLICLSATPIVNDVREFQMLVNLLRPGILTPDKSLFYNKKLIDE FT KEIISKLGCICSYIVNNEASIFEDVENTTLFAKKTVHIKHVFMSKKQEELYLKARYLER FT KLGISVFKIYQRMASTFVFDDIPDKKKLTEEEYEKFVDSLSIDFKNTLYGKKISKQSLD FT ILSAGGTINDIKDVKDIELYNYLYEHSCKFTFVCVSIIQSKGKCLVFEPFIRSSGIEIL FT LQYFNVFGITYIEFSSRTKDIRSKSVSDFNKVDNTDGEITKVCVFSQSGNEGISFLSIN FT DIFILDMTWNEASLKQIIGRAIRLNSHVNNPPERRYVNVYFVVAKLSSGRSSVDDILLD FT IIQSKSKEFSQLYKVFKHSSIEWIYSNYTDFQTVDDEKGFKKLISRNIILDENTITNKK FT KLTMGENIWYSFSSSLVSIHRGFKSMDNKIYDSEGFFITVLPDKPTIKIYEGKLIYILT FT VR" FT CDS complement(5221..6090) FT /gene="fp-d12" FT /product="FP-D12" FT /function="mRNA capping enzyme (small subunit)" FT /db_xref="GOA:O72908" FT /db_xref="InterPro:IPR005009" FT /db_xref="UniProtKB/Swiss-Prot:O72908" FT /protein_id="CAA06402.1" FT /translation="MNTDRITAFIKNGISARMPFYDTLPDMDLVFGKNHLPSLEYGANY FT FLQLSKINDINRLSTEMLSLYTHDLNKESDISKLFEPYNIKTIKSYGRSIQADAVVVDL FT RPSNSLYKNEHPYYKSNNYLKENNLYICDYTMITFEIYRPIFELSTEKTCIIKVPTLFG FT KTIVNAVRVYCSLFRYVKLYKLSADSWLKDSAIIVCQQPHAANINKFITYIRKVTKSQT FT WLDSNNVNFILIHDSVERVFIEKFLSFSYKIYESLYYVHSLLYSSMTSDLQSLDNEYQK FT KLIKLLRG" FT CDS complement(6122..7780) FT /gene="fp-d13" FT /product="FP-D13" FT /function="rifampicin resistance in vaccinia" FT /db_xref="GOA:O72909" FT /db_xref="InterPro:IPR005008" FT /db_xref="UniProtKB/Swiss-Prot:O72909" FT /protein_id="CAA06403.1" FT /translation="MNNSIISSVINSIDSSSKRTNIFSFDVQQPTAYMPQYISVNGYHN FT KKDNDANQVCSVSFDIRDQHIAAINYFFISIQLPEVSGEGKFAYVPYVGYKCIQHVAIT FT CGDITIWETDGEELFDKCVDDKIASLSGYSPELNDISTGYTPNDTIKDPTTLYVYIKSP FT FDADKTISSLKLVNNKITVTITFRSINDVIVYDSKFQVERFVKDFVYSTELHLIAYAVS FT DIKPKSAYIELDRRVVSCSSTPTPIPVISDVYACTAMSVYVKPYYGMMENKFISYPGYK FT QTESDYVRCMVNRLLDDLVVVADTVPKGFPSTATFVKVPVDGQINLQDVDIIVKIDNVP FT DDKDIYYHTNLLIFGTRKNSFVYNISKKFSSIIGMYSPNTDSINFSKVNHTISITDASI FT PVSFWVSQKNVYQGDNRSNYSKSKDLVVNDPFRKGIDMVNKTDVISRLEVRFGNDPIYS FT EISPITKVFNMLLTGSSINMRKIIFNMNPANIFRPTTLNANTKRGKDKLTVRISYIDTD FT PNNPIHYVAKQLVVICTDLYRIDYDGNINITKITE" FT CDS complement(7801..8265) FT /gene="fp-a1" FT /product="FP-A1" FT /function="late gene transcription factor" FT /db_xref="GOA:O72910" FT /db_xref="InterPro:IPR010507" FT /db_xref="UniProtKB/Swiss-Prot:O72910" FT /protein_id="CAA06404.1" FT /translation="MYKKVNLSGIVISEPKSVKKFKTKDSIVNVLPEYYHTIADKRLEI FT RKDKDNCWFCKQDMNTYNPYFIETLYGDHIGVFCSKICRDSFANMIKSVIALREEPKIS FT LLPLELYEKPEEVLEVINDLRHKEGIYGSCILESDKNIIKLTLRCHCNTN" FT misc_feature 1879..2568 FT /gene="fp-d9" FT /product="FP-D9" FT /note="Disrupted ORF in highly tissue culture passaged FT fowlpox FP9 (essential for vaccinia in tissue culture), 3 FT frame-shifts" XX SQ Sequence 8359 BP; 2918 A; 1228 C; 1282 G; 2931 T; 0 other; tatagagaag ataacagacg accatttctt cgttactaat aaagtatttg aaaaatcatt 60 gttatataaa cataaaaatg atattatagt agtacctttc aatctattgt ttacagaata 120 ttcttggatg attaatttta gaaaggaact aaatgtcgtt gtttaataca aacgcgtatt 180 tacccgtagt tatacaaccc catgaattaa atttagatct aatggataat ataaaaaagg 240 cagttataaa taagtattta cacaaggaaa catctgggtt tatggccaaa aagatacaga 300 tagtagaaga tacccccatg ccattagcgg agttagttaa taatgaaata gttgttcatg 360 tgacatgtaa catagattat aaatactata aggtaggtga tatagtttct ggtatactaa 420 ctattacaga cgaatctgat atttcggtag tttgtagtga tctaatttgt aaaatcagaa 480 gcgactccgg tactgtttca tatgataatt caaaatactg tttcataaag aacggtaaag 540 tctacgctaa tgaaagtaca gttactgtta tgttaaaaga agcccaatct ggaatggaat 600 catcttttgt tttcttaggt aacataattg aaaaataata ctttaataaa gattaattta 660 cataatacct acatcatgta acgtatagct tattaaacat ggatagcatt tagtaatatt 720 tgtaaaatca aaaataacta taaatatttt aatagtatat tgaattcttt atcatgtaga 780 aagatattag ttatacacac aatgatatgt aaaaatagta ttcgacataa agaattgacg 840 ttgataatat ttctctgctt tatatatcta tcaaaaactt ttgtagaagt aaaagcacct 900 ccctatgtac tcgtaccgga aggtagtgat ataaatctta cttgttttat taaagatgat 960 cagggtgctg gagaagataa agtaattgta gcgtggcaac agggtgacgg agaagttact 1020 caaggaataa aaacaacttg ggatacgaca cgacaagtgg gccaaaccat gctacatata 1080 tccaaggtat ctaaagaagc agaaggttca tatatgtgtg ttgtatggat aaacggcgac 1140 gctgattata aaaaaatgaa tctaggagtg tttactgttt caaaaaaaac ctacatgcat 1200 aacgaagtaa gtataacccc tcgaagatcg agagtagata tgtcggatgg tcggccgcta 1260 aaaattgaat gtgcttttag tacccgacga atatatggta gaagccaagt caacataaaa 1320 tggtggaaga ttgacggtat tacacgaaaa tgggaacaac agacttcggg agttaactta 1380 ctgttacata cttatggagg gataggatcg ctaagtatcc caaatcctac aacaggagaa 1440 tcaacaggta agtatatgtg cgtagttacc tgtggagata ttggaaatgt tggatttaga 1500 ctggtaaaat cattatctcc tttatcagat acagaatctg atcatagtta tacttcagag 1560 gaaggatcac attttatgga aagatgcaaa gtcaaaaaaa gtccgtacgg tggatggata 1620 gtagaataga tcatctcagg gacgcggtat atattgctat aaagtaaaat aatttctcaa 1680 tacatttttc tactttaacg atataatcgt taacttatta gtttaattat atcatatatt 1740 cctttatatc ttaattaaaa aaatatattc ataaatggga tacactagta tttttttata 1800 tagtttacga tatgctattt cactatatat agtttatcaa acataagtga aaaataaaca 1860 actataaaaa ctaagatcat gttcgatata tccagagaac aacaaaatat attagaaaaa 1920 aataaagatt gtgttattac tttcgaaaca aataaagaat aactatagaa aacactaaca 1980 taaaagatat acttagcgat agacgaattc acatatcgcg ttatgtatta catcagataa 2040 tatacctata atcggtataa gaagaacgtc ttttatgtat caatcggtta tatcaaaaag 2100 aagaagcttt tcagaaatat tagccgtcga tataaaccat ctaaagtata tgtataataa 2160 cgaaattaaa gaaatatcat tagatcaata gtaccattca catatagcgg attcaacaac 2220 tttgaagagt tagtattatt aggaggaaga gttaaaaata aagaatcaat atatcaatgc 2280 ctgagtagag aactatcgga agaaagcgat ggaatactta ctataaaaac atttggtaat 2340 aaaatattaa aacttaccat agaagataag atacttcgta gaacatttta tgggtattgt 2400 atagtgtgtt ttatagacca actctattca gaaatcatta aacctttata taacatagaa 2460 atcaaagaat taggatcatt atttgatcga tcaagtaatg aaaaatacga atacttgcat 2520 tttatttata ataccttatt aacatataaa tatgggggag tattataaaa ataaattgct 2580 ccttaggccg tctgtatatt ctgataatat acaaaaaatc aaactggtag catatgaata 2640 tggcaaacta catgctaaat atccactatc cgtaataggt ataatgaaaa caatagatga 2700 caagtttgtt ttatgccata gatacaatag tttcttgttt tcagaaatag catttacaaa 2760 agataaacga cggaaaataa gactctttaa gaaatattca aagtatatga gtaacatcga 2820 acgtgatata ttaagttata agctatcgct tcctaataac tataatacaa accatataga 2880 tataatcttc ccaggtggta aaataaaaga cttggaaagt ataactaatt gtctagtaag 2940 agaaataaaa gaagaattaa atatcgattc ctcttatctc gctatctgta agaactgttt 3000 tgtatacggt tctatatacg acagattgat agataaagat tttgaagtta tagcccttta 3060 cgtagaaaca gatcttacga gtagacaaat attgaataga ttcatcccta atagagaaat 3120 taaaggaata tcatttatag acgcaagaga tattaacaaa gattatttgt atactaatgt 3180 aattaaatat ataataaacg ctgtaagaac atccgctagc aatagttaac atctatctaa 3240 ctgttaatat ataaattaat tttccttcat atatttttat agtaggctta tcgggtaata 3300 ctgtgatgaa aaatccttca gagtcgtaaa ttttattatc catggatttg aaacctctgt 3360 gaatggatac taaagaagaa gaaaatgaat accatatatt ttcacccata gttaactttt 3420 ttttatttgt tattgtattt tcatctagta tgatattcct agaaattaat tttttaaacc 3480 ccttttcatc gtccactgtc tgaaaatctg tatagttaga atagatccat tctatagacg 3540 aatgtttaaa taccttatag agctgtgaaa attctttaga cttagattga ataatatcta 3600 acaaaatatc gtccacgcta gatctaccag acgatagttt agctaccacg aaatacacgt 3660 ttacgtatct acgttctggc gggttattaa cgtgactgtt aaggcgtata gcacgtccta 3720 taatttgttt taaagatgct tcgttccacg tcatatccag tataaaaata tcgtttatag 3780 aaagaaaact tataccttcg tttccacttt gggaaaatac gcatactttc gttatttcac 3840 catcggtatt atctacttta ttgaaatcgg atacgctttt agatctaata tccttcgtcc 3900 tagaagagaa ctctatatat gttataccaa atacgttaaa gtattgtagc aatatttcta 3960 ttcctgacga tcttataaaa ggttcaaata cgagacattt tcctttagat tgtattattg 4020 aaacacatac gaatgtgaat ttacaactat gctcgtacaa atagttatat aattctatat 4080 ctttaacgtc tttgatatca ttaattgtac ctccagctga taatatatct aacgactgtt 4140 tagatatttt tttaccgtat aaggtatttt taaaatctat agataacgaa tctacaaatt 4200 tttcatattc ttcttcggtt aactttttct tatctggaat atcatcaaat acaaaagtag 4260 acgccatacg ttgatatatt ttgaataccg atatgccgag tttacgttct aaatatctgg 4320 cttttagata tagttcttct tgttttttag acataaacac gtgcttaata tgtacagttt 4380 ttttagcaaa aagagtagta ttttctacgt cctcgaatat agatgcttca ttgttaacga 4440 tataggaaca tatacatccc agttttgaaa tgatctcttt ttcatctatt agctttttat 4500 tataaaacaa agacttatca ggagttaata taccaggtct aagaagatta acaagcatct 4560 gaaattccct aacatcgttt acaataggtg tagccgacaa acatataagt ttattgtttt 4620 tttgcataag atttttcgct atgtagttat aaacaagttt agtattacgt tttttattat 4680 cttctttggt cagtgattta gatataaagt tgtggcattc gtctatgatg atgaaaattc 4740 tactttttac gtttatagat tttatatttg taaaaaactt attatgaaaa ttttgatcat 4800 cataattcat gataatacaa tctttcatta cttctggtgc ataatctaag atagtatgcg 4860 tccatggatc atctattaat gcctttttta ccaagatgat aatagtccat tcactatata 4920 tttttttaag gttcttgagc atatataccg tagtaattgt ttttccaaca cctgtttcct 4980 ggaataatag tatagagttc atactattga gtcctaaaaa aacttttgct acaaataatt 5040 ggtaatcctt caataaaacc gtattatcgt tcccgccagt catatctaca ggaaaggtat 5100 ctaatttctt aagcgcataa tcaatatacg cagcgtacgt gttcatttaa ctatatgtaa 5160 tttgttgaac aaattatcat tagtaaagta ttggtaacag ctatgatatt attaatacga 5220 ttaaccgcgt aacaacttaa tcaacttttt ttgatattcg ttatctagag attggagatc 5280 agatgtcatg ctactgtaga gtaacgaatg aacgtaatat aaagattcat atattttata 5340 tgaaaatgat aagaattttt ctataaatac tctttctaca gaatcgtgga ttaatataaa 5400 atttacattg ttgctgtcta gccaagtttg tgatttagta acttttctaa tataagttat 5460 aaatttattt atgtttgcgg catggggttg ttgacacact ataatagcac tatcttttaa 5520 ccaactatcg gccgatagtt tgtaaagctt gacatatcta aatagactgc agtaaacgcg 5580 cactgcgttt acgattgttt ttccaaaaag agttggtacc ttaataatac atgttttctc 5640 tgtggataat tcaaatatcg gacgatatat ctcaaaagtt atcatagtat aatcgcatat 5700 atatagatta ttttctttta agtagttatt agatttatag taaggatgtt cgttcttata 5760 aagcgagttg ctaggtctca ggtctacaac tacagcatct gcttgaatag atcttccgta 5820 agattttatg gtctttatgt tataaggttc aaaaagttta ctaatatcag attctttgtt 5880 aagatcgtgt gtatatagag ataacatttc agtagataaa cgattaatat cgttaatttt 5940 tgaaagctga agaaaataat tagcaccgta ttctagacta ggcaaatggt ttttaccaaa 6000 aacaagatcc atatctggca aagtatcata aaaaggcatt cttgctgaaa tgccattttt 6060 aatgaaagcg gttatcctgt ccgtattcat tttattaata ccttatttat aaaatcattt 6120 tttattcagt aattttagtt atattaatat tcccatcata atctatcctg tatagatctg 6180 tacatataac tactagttgt ttagctacat aatgtatagg attattagga tctgtatcga 6240 tataagatat cctaactgtg agtttatctt tccctctctt agtattagca ttgagagtgg 6300 taggtctaaa tatattagcc ggattcatat taaaaataat cttcctcata tttatgctac 6360 tcccagtaag tagcatgtta aatacttttg taataggaga gatttctgaa tatataggat 6420 catttccaaa acgtacttct agtctagaaa ttacatccgt tttattaacc atatctattc 6480 ctttcctgaa gggatcgttt actactaagt ctttagattt agaatagtta gatctgttat 6540 ctccctgata gacgttcttt tgtgataccc agaagctaac aggtatagaa gcatccgtaa 6600 tactgatggt atggtttact ttagaaaagt tgatactatc tgtattagga gaatacatac 6660 ctattataga tgaaaacttc ttggatatat tataaacgaa agagtttttc cttgttccga 6720 atattaatag attagtatgg tagtatatat ctttatcatc gggtacgttg tctattttaa 6780 ctattatatc aacatcttgt agatttatct gtccatcaac aggaactttt acaaatgttg 6840 ccgtgctcgg aaaacctttt ggtactgtat ctgccacaac aacaagatcg tctagcaagc 6900 gatttaccat acatcttaca tagtcagatt cggtttgttt atatccgggg taagatataa 6960 atttgttttc catcattccg taatagggct taacataaac agacatagca gtacacgcgt 7020 atacatctga aataacgggt ataggggtag gcgtactaga acacgagact actctacgat 7080 ccaactctat ataagcagac ttaggtttta tatcactaac cgcgtaagcg attagatgta 7140 attcagtaga ataaacaaag tctttaacaa acctctctac ttgaaactta gaatcataaa 7200 ctattacatc attaatactt ctgaatgtta ttgtaacggt tatcttatta ttaactagtt 7260 tcaaactact aatagtttta tccgcatcaa aaggagattt tatatataca tatagagtag 7320 taggatcttt tatcgtatcg ttaggagtat atcctgtgga gatatcgttt aactctggag 7380 aataaccgga taaactcgct atcttatcat ctacacactt atcgaaaagt tcttctccat 7440 ctgtttccca tatagtaata tccccgcagg taatagctac gtgttgaatg catttatagc 7500 ctacgtatgg tacgtaagca aacttacctt ctcccgatac ttctggcaat tgtattgata 7560 taaagaaata atttatagct gctatatgct gatccctaat atcgaatgac acgctgcata 7620 cttgattagc gtcattgtct tttttattat gatatccgtt aacggatata tattgtggca 7680 tataagccgt gggctgttgt acatcgaagc taaatatgtt agttcgcttg ctgctagaat 7740 ctatagagtt aattaccgaa cttattatag aattattcat ttatagtaag tgaaaattat 7800 ttaattagta ttacaatggc atcttagtgt taatttaatg atatttttgt cggattcaag 7860 tatacagctt ccatatattc cttctttgtg tcttagatcg ttgattactt ctaatacttc 7920 ttccggcttt tcatatagtt ccaacggcag aagagatatt ttaggttctt ctcgtaaagc 7980 tattacactt tttatcatgt tagcgaaaga atccctacaa attttggaac aaaatacccc 8040 tatatgatca ccgtatagag tctctataaa atagggatta tatgtattca tatcttgttt 8100 acagaaccag caattatctt tatctttacg tatttcgagt cttttgtcag caatagtatg 8160 gtagtattct ggcaatacat taactataga atcttttgtc ttaaattttt ttaccgattt 8220 tggttctgat ataactatac cagaaaggtt gactttttta tacattatta tttatattac 8280 caatttgcta tttatataaa tttctatttg tgataaccgt atgtcatttt agatatatgc 8340 ttatttaacc ttcttacta 8359 // |
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