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EBI DbfetchID AJ000975; SV 1; linear; genomic DNA; STD; PRO; 7589 BP. XX AC AJ000975; XX DT 01-OCT-1997 (Rel. 52, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Bacillus subtilis ylqg to codV gene region XX KW codV gene; DNA topoisomerase I; gid gene; smf gene; sucC gene; KW succinyl-coa synthetase alpha chain; succinyl-coA synthetase beta chain; KW sucD gene; topA gene; ylqG gene; ylqH gene. XX OS Bacillus subtilis OC Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. XX RN [1] RP 1-7589 RA Foulger D.; RT ; RL Submitted (30-JUL-1997) to the EMBL/GenBank/DDBJ databases. RL Foulger D., Sir William Dunn School of Pathology, University of Oxford, RL South Parks Road, Oxford, Oxon, OX1 3RE, UK. XX RN [2] RA Foulger D., Errington J.; RT "Cloning and sequencing 7.5Kbp of DNA from Bacillus subtilis upstream of RT the codV gene"; RL Unpublished. XX RN [3] RA De Jong S.; RT "Cloning and sequencing of the TopI gene, the gene encoding B. subtilis DNA RT Topoisomerase I"; RL Unpublished. XX RN [4] RX DOI; 10.1111/j.1365-2958.1995.tb02378.x RX PUBMED; 7783641. RA Slack F.J., Serror P., Joyce E., Sonenshein A.L.; RT "A gene required for nutritional repression of the Bacillus subtilis RT dipeptide permease operon"; RL Mol. Microbiol. 15(4):689-702(1995). XX FH Key Location/Qualifiers FH FT source 1..7589 FT /organism="Bacillus subtilis" FT /map="141" FT /strain="168" FT /mol_type="genomic DNA" FT /db_xref="taxon:1423" FT CDS <1..127 FT /codon_start=2 FT /transl_table=11 FT /gene="ylqG" FT /product="YlqG protein" FT /db_xref="UniProtKB/TrEMBL:Q7B3S2" FT /protein_id="CAA04417.1" FT /translation="LKEMGYSLSGVNAKKRVHTEEKASIDQYITSISDQEVDVKI" FT RBS 109..119 FT /gene="ylqH" FT CDS 124..405 FT /transl_table=11 FT /gene="ylqH" FT /product="YlqH protein" FT /db_xref="GOA:O34867" FT /db_xref="InterPro:IPR006135" FT /db_xref="UniProtKB/TrEMBL:O34867" FT /protein_id="CAA04418.1" FT /translation="MKEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAG FT VPIQEDRTLVELMRHLTVDDQIPEALYETVAEIFSFIYKLDESVKNKK" FT RBS 562..570 FT /gene="sucC" FT CDS 578..1735 FT /transl_table=11 FT /gene="sucC" FT /product="putative succinyl-coA synthetase beta chain" FT /db_xref="GOA:P80886" FT /db_xref="HSSP:2SCU" FT /db_xref="InterPro:IPR016102" FT /db_xref="UniProtKB/Swiss-Prot:P80886" FT /protein_id="CAA04419.1" FT /translation="MNIHEYQGKEVLRKYGVSVPEGKVAFTAEEAVESAKSLSSSVYVV FT KAQIHAGGRGKAGGVKIAKSLDEVKAYAEELLGKTLVTHQTGPDGQVIKRLLIEEGCDI FT KKEYYIGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREI FT AFAINIPKELVGKAAKFMLGLYKAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNA FT LYRQKDIMEYRDLDEEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGG FT EPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATRQVG FT LTLPLVVRLEGTNVDLGKKILSESGLNITSAESMADGAQKIVSLV" FT RBS 1746..1758 FT /gene="sucD" FT CDS 1764..2666 FT /transl_table=11 FT /gene="sucD" FT /product="putative succinyl-coA synthetase alpha chain" FT /db_xref="GOA:P80865" FT /db_xref="HSSP:1SCU" FT /db_xref="InterPro:IPR016102" FT /db_xref="UniProtKB/Swiss-Prot:P80865" FT /protein_id="CAA04420.1" FT /translation="MSVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGG FT TEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLD FT MVKVKRFMEGKKTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVH FT QLSEAGVGQSTAVGIGGDPVNGTNFIDVLKAFNEDPDTHAVIMIGEIGGTAEEEAAEWV FT KANMTKPVVGFIGGKTAPPGKRMGHAGAIISGGKGTADEKIKTLNACGIEVAETPSVMG FT ETLIKVLKEKNLFETCKTH" FT terminator 2673..2704 FT /gene="sucD" FT RBS 2711..2721 FT /gene="smf" FT CDS 2727..3620 FT /transl_table=11 FT /gene="smf" FT /product="Smf protein" FT /db_xref="GOA:P39813" FT /db_xref="InterPro:IPR003488" FT /db_xref="UniProtKB/Swiss-Prot:P39813" FT /citation=[3] FT /protein_id="CAA04421.1" FT /translation="MDQAAVCLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRD FT QIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPISSKQYPFWLKSIYDPPAVLFAKGD FT MTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAASIKA FT KGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLS FT EGVIVVQGKEKSGSLITAYQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAED FT IFEELPERNVQYTEPF" FT conflict 3510 FT /replace="c" FT /citation=[3] FT stem_loop 3623..3641 FT RBS 3795..3800 FT /gene="topA" FT CDS 3808..5883 FT /transl_table=11 FT /gene="topA" FT /product="DNA Topoisomerase I" FT /db_xref="GOA:P39814" FT /db_xref="HSSP:1ECL" FT /db_xref="InterPro:IPR003602" FT /db_xref="UniProtKB/Swiss-Prot:P39814" FT /citation=[3] FT /protein_id="CAA04422.1" FT /translation="MSDYLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVD FT IEQNFEPKYITIRGKGPVLKELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLNS FT DCRVVFNEITKDAIKESFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLS FT AGRVQSVALRLIIDREKEINDFKPEEYWTIDGTFLKGQETFEASFFGKNGKKLPLNSEA FT DVKEILSQLKGNQYTVEKVTKKERKRNPALPFTTSTLQQEAARKLNFRAKKTMMIAQQL FT YEGIDLGREGTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLGGKRKPAKKNENA FT QDAHEAIRPTSVLRKPSELKAVLGRDQMRLYKLIWERFVASQMAPAVLDTMSVDLTNNG FT LTFRANGSKVKFSGFMKVYVEGKDDQMEEKDRMLPDLQEGDTVLSKDIEPEQHFTQPPP FT RYTEARLVKTLEERGIGRPSTYAPTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEFF FT PEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKKAESEMKEVEIEPEYAG FT EDCELCSSPMVYKMGRYGKFLACSNFPDCRNTKPIVKQIGVKCPSCGEGNIVERKSKKK FT RVFYGCDRYPDCEFVSWDKPIERKCPKCGKMLVEKKLKKGIQVQCVECDYKEEPQK" FT stem_loop 5885..5906 FT RBS 5945..5952 FT /gene="gid" FT CDS 5959..7266 FT /transl_table=11 FT /gene="gid" FT /product="Gid protein" FT /db_xref="GOA:P39815" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:P39815" FT /citation=[3] FT /citation=[4] FT /protein_id="CAA04423.1" FT /translation="MNQQTVNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVKQTPAHHT FT DKFAELVCSNSLRSNTLANAVGVLKEEMRALDSAIIAAADECSVPAGGALAVDRHEFAA FT SVTNRVKNHPNVTVINEEVTEIPEGPTIIATGPLTSESLSAQLKELTGEDYLYFYDAAA FT PIVEKDSLDMDKVYLKSRYDKGEAAYLNCPMTEEEFDRFHEALTSAETVPLKEFEKEIF FT FEGCMPIEVMAKRGKKTMLFGPMKPVGLEHPVTGKRPYAVVQLRQDDAAGTLYNIVGFQ FT THLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKPTYQFKNRSDLFFAGQM FT TGVEGYVESAASGLVAGINAAKLVLGEELVIFPQETAIGSMAHYITTTNQKNFQPMNAN FT FGLLKELPVKIKNKKERNEQYANRAIETIQTISKTI" FT RBS 7321..7329 FT CDS 7334..>7589 FT /transl_table=11 FT /gene="codV" FT /product="CodV protein" FT /db_xref="GOA:P39776" FT /db_xref="HSSP:1A0P" FT /db_xref="InterPro:IPR011931" FT /db_xref="UniProtKB/Swiss-Prot:P39776" FT /citation=[4] FT /protein_id="CAA04424.1" FT /translation="MENVKNFVKLFVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQGI FT NGFEEAAYQDTRIFLTEAYEKGLSRRTISKKISALRSFYK" XX SQ Sequence 7589 BP; 2505 A; 1398 C; 1807 G; 1879 T; 0 other; gctaaaggaa atggggtaca gcctttcagg ggtaaacgct aaaaaaaggg ttcacaccga 60 agaaaaggct tcaatcgatc aatatataac aagtatcagt gatcaggaag tggatgtgaa 120 aatatgaaag agcagacacc gatcagaaaa gctgttgctc tccattatga cgaacaaaaa 180 gacaaggcgc cgagagtgat tgccacaggg aagggccatg tagctgacaa cattataaaa 240 gaagcgaaaa aagcaggggt cccgattcaa gaagatcgga cccttgtcga attaatgcgc 300 catttgacgg tagatgatca aattcctgaa gctctttatg aaacggtagc cgagattttt 360 tcattcattt acaaattgga cgaaagcgta aaaaacaaaa aatagctaaa atattcccca 420 tccttctttg aaatttatgt ttttaataaa gtaaaagttt gaatgtttag aaggattaaa 480 agattttgca tcgaactgta gacaattctt ccagtattat tatagaatga aagcgcagtc 540 tattttagtt ttgttacata agttaggagg atgggaaatg aatatccatg agtaccaggg 600 aaaagaagtc ctcagaaaat atggggtatc tgttcctgaa ggtaaagtgg cttttacagc 660 agaagaagca gttgagagtg caaagagctt atccagctcg gtttatgtcg taaaggctca 720 aattcatgct ggcggtcgag gcaaagctgg tggggtaaaa atagcaaaat cattagacga 780 agtaaaagcg tatgccgaag aactattagg gaagacccta gttacacatc agacgggtcc 840 ggacggccaa gtaataaaac gcttacttat tgaagaaggc tgcgatatta aaaaagaata 900 ttacatcggt ctagtgcttg accgcgccac ttcaagaatc gttttaatgg cttctgaaga 960 aggcggaacg gaaattgaag aggttgcgga gaaaacacca gaaaaaatca aaaaagctgt 1020 cattgatcca gctgttggcc ttcaaggcta tcaagccaga gaaattgcat tcgctattaa 1080 tattccaaaa gagctcgtgg gaaaagctgc taaatttatg cttggactat ataaagcgtt 1140 tgttgagaaa gactgctcaa tcgccgaaat caatccgctt gttgtgactg gcgacggaaa 1200 tgtgatggcg cttgatgcaa aattgaattt tgacagcaat gcgttgtacc gacaaaagga 1260 cattatggaa tacagagatt tggatgaaga agatccgaaa gaaattgaag cgtccaaata 1320 tgatctaagc tacatttccc ttgatggaaa tatcggctgt atggtaaacg gcgcgggact 1380 tgcaatgtct acgatggata ttatcaagca ttatggagga gaaccggcca acttccttga 1440 tgtgggcggc ggtgcaaccg cggaaaaagt cacggaagca tttaaaatca ttctttctga 1500 tcaaaacgtt aaagggattt ttgtcaacat tttcggcggc attatgaaat gtgatgtcat 1560 cgcagaaggg gttgttgaag cgactagaca agttggtttg acattgccgc ttgtcgtccg 1620 tcttgaaggc acaaacgtgg atctagggaa gaaaatcctt agtgaatcag gattaaacat 1680 tacatctgcg gaatcaatgg ctgacggcgc gcagaaaatc gtatccttag tttaagaaag 1740 aatgaaaggc aggggaccaa ataatgagtg ttttcattaa taaagataca agagttattg 1800 tgcaagggat tacaggttct accgctttat ttcatacgaa gcagatgctt gaatacggca 1860 caaatatcgt tggcggtgta acacctggaa aaggcggaac agaagcggaa ggtgttcctg 1920 tatttaatac agtggctgaa gcagttcaaa caaccggcgc taacgcgtct gttatatatg 1980 tgcccgcacc gtttgcagct gatgcgatta tggaagcggt agatgcggag cttgatctcg 2040 tgatttgtat cacagaacat atcccggttt tggatatggt gaaggtcaaa cgcttcatgg 2100 aaggcaagaa aacgagactg atagggccga actgtcctgg tgtcattacg cctgaagaat 2160 gtaaaatcgg cattatgccc ggatacatcc ataaaaaggg tcatgtaggc gttgtatcac 2220 gttcaggaac attaacatac gaagcggtgc accagctctc agaagcgggt gtagggcaat 2280 ctacagctgt tggaatcggc ggcgaccctg taaatggaac aaactttatt gacgttttaa 2340 aagcgtttaa cgaagatcct gacacacacg cagtcatcat gattggcgaa atcggcggta 2400 cggccgaaga ggaagcggca gagtgggtaa aagccaacat gacaaaaccg gtagtcggtt 2460 ttattggcgg taaaacagca cctcctggga agcgcatggg gcatgcaggc gccattattt 2520 ccggcgggaa agggacagct gatgaaaaaa tcaaaaccct taatgcatgc ggaatcgaag 2580 ttgcagagac accttctgtc atgggtgaaa ccttaatcaa ggtgctgaaa gagaagaact 2640 tgttcgaaac ttgtaaaacg cattaataaa aaagggacag ccgtcaaggc tgttcctgct 2700 ttttctaaca aaaggaggtc aatctattgg atcaggccgc tgtctgccta acgatttgca 2760 gaatcaatca attattatcc ccatcccttc tattaaaatg gtggaaagcc gatccgtcta 2820 tgtcgctgac atcacccgtg ttacaaacgg ttactcgtga tcaaataaaa gcagctgcat 2880 taaaaaacga aatagaacaa ttttatccaa agctcccgcg tgtacttgct gcttatcgtg 2940 agcaaggcat taacaccatc cctatttctt caaagcaata tcctttctgg cttaaaagca 3000 tttatgatcc ccctgccgta ctgtttgcaa aaggtgatat gactcttctt tcgaaaggga 3060 gaaaaattgg aattgtaggc acaagaaatc caacagctta tgggaaacaa gttgtcaatc 3120 atcttacaaa agagatctgt cgtaaaggtt gggtgattgt cagcggactg gcgtctggga 3180 tagacggaat gtcccatgct gcaagtatta aggcgaaggg gcggacaatt ggcgtcattg 3240 caggcggatt tcaacacatt tatccccgag aaaaccttca gttagcagat cacatggcta 3300 aacaccatat cctgctgtca gagcacccac ctgaaactaa accccaaaaa tggcatttcc 3360 ctatgagaaa ccgtattatc agcggactaa gtgaaggcgt tattgtcgtt cagggcaaag 3420 aaaaaagcgg ttcgctgatt actgcctatc aagcattgga acaagggaga gaggtatttg 3480 ccgtacccgg ttcattgttt gacccttacg ccggaggtcc tataaaactg atccagcagg 3540 gggctaaagc catatggtca gcagaggata ttttcgagga acttcctgag agaaacgttc 3600 aatatacgga acccttttga attatcgttt gacaaacggt attgtaatat ttaataatag 3660 tgaggattta aagttgcata ttgttttcta tttaattaat gacgttcatg ataaagaatg 3720 aaatgttgaa agccaaataa agacagctgc aaaaataaaa ttgaaatatc ttgaaaagag 3780 agagaacacc tcttgagggg gatgaaaatg tctgattatc tagtcatcgt ggaatcgccc 3840 gctaaggcga aaacgattga acgttactta ggtaaaaaat ataaagtaaa agcatcaatg 3900 ggacatgtcc gggatcttcc aaaaagtcaa atgggagttg acatagaaca gaattttgaa 3960 ccgaaatata ttaccattcg aggtaaaggc ccggtattaa aagagctgaa aacggctgcg 4020 aaaaaagcca aaaaagtgta tctcgcagct gaccccgaca gagaagggga agcgattgca 4080 tggcatttgg cacacagtct tgatttagat ctcaactcag actgccgtgt ggtgtttaac 4140 gaaattacaa aagacgctat taaggaatcg tttaagcatc cccgcatgat caatatggat 4200 ttagtggatg cacagcaagc gagacgtatt ttagacaggc ttgtcggata taaaatcagt 4260 ccaatcttat ggaaaaaagt caaaaaaggg cttagcgcag gacgcgtgca atccgttgcc 4320 ctccgtttga ttattgaccg tgaaaaagag attaacgact ttaagcctga ggaatattgg 4380 acaattgacg gtacgttctt aaaaggtcaa gaaacctttg aagcgagctt tttcgggaaa 4440 aacggcaaaa aacttccttt aaatagtgaa gctgatgtaa aagagattct ttctcagctc 4500 aaagggaatc aatatacagt tgaaaaagta accaaaaagg aacgcaaacg taatcctgct 4560 ttgcctttta ccacttctac cctgcagcag gaagcggctc gcaagctcaa tttcagagcg 4620 aagaaaacga tgatgattgc acagcaatta tatgaaggaa ttgatttagg aagagaagga 4680 acggttggtc tgatcacgta tatgagaacg gattcaaccc gtatttcaaa tacggctgtt 4740 gatgaagcag ctgcatttat tgatcagaca tatggaaaag agttcctagg cggaaaacgg 4800 aagcctgcga aaaagaatga aaatgcccag gatgcccacg aagcaattcg gccgacatca 4860 gttcttagaa aaccaagtga attaaaagca gtcctcggca gagaccaaat gagactgtat 4920 aaattaattt gggagcgttt tgttgccagc caaatggcac cggctgttct cgatacaatg 4980 agtgtcgacc tgacaaacaa cggtttgaca tttcgtgcaa atggaagtaa agtcaagttt 5040 tccgggttta tgaaggtgta tgttgaagga aaagacgatc aaatggaaga aaaagaccgg 5100 atgctgcctg acttacaaga aggcgacacg gtattatcaa aagatataga acctgagcag 5160 cattttaccc agccgcctcc gcgatatact gaggcccggc ttgttaaaac ccttgaagaa 5220 cgcggtatcg gccgtccatc cacatatgct ccgacacttg atactattca gcggcgcggc 5280 tacgtggcat tggataataa acgtttcgtt ccgactgaat taggtcagat cgttcttgac 5340 ttgatcatgg agtttttccc tgagatcatt aacgttgagt ttacagctaa aatggagaga 5400 gatcttgatc atgttgaaga aggaaatacc gaatgggtca agattatcga taatttctac 5460 accgattttg aaaaacgcgt caaaaaagcc gaatcggaaa tgaaggaagt tgagattgaa 5520 ccagagtatg ctggagagga ttgtgaattg tgcagttctc caatggtata taaaatggga 5580 cggtacggta aattcttagc ttgctccaac ttccctgact gccggaacac gaaaccgatt 5640 gtgaaacaaa tcggtgtgaa gtgcccgagc tgcggagaag gaaacattgt tgagcgaaaa 5700 tcgaaaaaga aacgggtgtt ttacggctgt gaccgttatc cggactgtga attcgtatca 5760 tgggacaaac caattgaacg aaaatgcccg aaatgcggaa aaatgctcgt cgagaaaaaa 5820 ctcaaaaaag gtatacaagt ccaatgcgtg gaatgcgatt ataaggaaga accacagaag 5880 tagcggtgag cagggtcttg ctcaccttct ttgtgtgtta aaagaaggcc ttgaataata 5940 aactaggaga tgtgaaagat gaaccaacaa acagtgaatg taatcggagc cggactcgca 6000 ggaagtgaag cagcatggca gcttgccaaa cgtgggattc aagtcaaatt gtatgaaatg 6060 cggccagtta aacaaacgcc tgcgcatcat acagataaat ttgctgagct tgtctgcagc 6120 aactctcttc gctctaatac acttgctaac gctgtcggtg tattaaagga agaaatgcgt 6180 gcgcttgatt cagccattat cgctgcggct gacgaatgtt cggtgcctgc cgggggcgct 6240 cttgcagtag accgtcatga atttgccgca agtgtgacaa atcgggtgaa aaatcatcca 6300 aacgtaaccg ttattaatga agaagtgact gaaattcctg aaggccctac tatcatcgca 6360 acgggtccgt taacatctga atcgctgtct gcccagctga aggagctgac tggagaggac 6420 tatttatatt tttatgacgc agcggcgcca attgtagaaa aagacagcct tgatatggat 6480 aaagtgtacc tgaaatcccg ttatgataaa ggtgaagcag catatttgaa ctgcccgatg 6540 acagaagaag agtttgaccg ttttcatgaa gcattaacat cagcagaaac agtgccgtta 6600 aaagaatttg aaaaagagat tttctttgaa ggctgcatgc cgattgaagt catggcaaaa 6660 cggggtaaga aaacaatgct tttcggtccg atgaaaccag ttggtctaga gcatcctgtt 6720 acaggaaaac gcccttatgc cgtcgttcag ctcagacagg atgatgctgc gggaacactt 6780 tataatattg taggattcca gacacattta aaatggggag accaaaagga agttctcaag 6840 ttgattccag gacttgaaaa tgtagaaatc gtcagatatg gcgtgatgca tagaaacaca 6900 tttattaact ctccaagcct gttaaagccg acttatcaat ttaaaaaccg cagtgatctg 6960 ttctttgcag gccaaatgac gggagtagaa ggatatgtgg aatcagctgc ctcaggactt 7020 gtagcaggca ttaatgcggc gaagcttgta ttgggagaag agcttgtgat cttccctcag 7080 gaaacagcaa ttggcagtat ggcacattat attacaacaa caaaccagaa gaacttccag 7140 ccgatgaatg caaactttgg gcttttgaaa gaattgccag ttaaaattaa aaataaaaaa 7200 gaacgaaatg aacaatacgc gaaccgtgcg attgaaacaa ttcaaacaat ttcgaaaaca 7260 atataggtat tgattgcaac ctgagcgcga tttgtgatac catttaaaag cccttcctgg 7320 ggaggtatta ggcatggaga atgttaagaa tttcgtaaag ttattcgttg aatatttaca 7380 aattgaaaaa aattattcac aatatactat tgtgaattat gtggattcaa ttgaagaatt 7440 cgagactttc ctgcgcgttc aaggtataaa tggatttgaa gaagctgcat atcaagatac 7500 taggattttt ttgacagaag cctatgaaaa aggtttatcg agaagaacaa taagcaaaaa 7560 gatatctgca ttaagaagct tttataagt 7589 // |
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