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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF515607; SV 1; linear; mRNA; STD; PLN; 1267 BP.
XX
AC   AF515607;
XX
DT   21-DEC-2002 (Rel. 74, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Populus tremula x Populus tremuloides xyloglucan endotransglycosylase
DE   precursor (XET16A) mRNA, complete cds.
XX
KW   .
XX
OS   Populus tremula x Populus tremuloides
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids I; Malpighiales; Salicaceae; Saliceae; Populus.
XX
RN   [1]
RP   1-1267
RX   DOI; 10.1105/tpc.007773
RX   PUBMED; 12468728.
RA   Bourquin V., Nishikubo N., Abe H., Brumer H., Denman S., Eklund M.,
RA   Christiernin M., Teeri T.T., Sundberg B., Mellerowicz E.J.;
RT   "Xyloglucan endotransglycosylases have a function during the formation of
RT   secondary cell walls of vascular tissues";
RL   Plant Cell 14(12):3073-3088(2002).
XX
RN   [2]
RP   1-1267
RA   Denman S.E., Eklund M., Teeri T.T.;
RT   ;
RL   Submitted (22-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   Livestock Industries, CSIRO, 120 Meiers Rd, Indooroopilly, Brisbane, Qld
RL   4068, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1267
FT                   /organism="Populus tremula x Populus tremuloides"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:47664"
FT   5'UTR           1..62
FT                   /gene="XET16A"
FT   CDS             63..947
FT                   /codon_start=1
FT                   /gene="XET16A"
FT                   /product="xyloglucan endotransglycosylase precursor"
FT                   /EC_number="2.4.1.207"
FT                   /note="glycoside hydrolase family 16"
FT                   /db_xref="GOA:Q8GZD5"
FT                   /db_xref="InterPro:IPR008263"
FT                   /db_xref="PDB:1UMZ"
FT                   /db_xref="UniProtKB/TrEMBL:Q8GZD5"
FT                   /protein_id="AAN87142.1"
FT                   /translation="MAAAYPWTLFLGMLVMVSGTMGAALRKPVDVAFGRNYVPTWAFDH
FT                   IKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSE
FT                   HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVF
FT                   LVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYR
FT                   SFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRY
FT                   PSMPPECKRDRDI"
FT   sig_peptide     63..128
FT                   /gene="XET16A"
FT   mat_peptide     129..944
FT                   /gene="XET16A"
FT                   /product="xyloglucan endotransglycosylase"
FT   3'UTR           949..1267
FT                   /gene="XET16A"
XX
SQ   Sequence 1267 BP; 345 A; 264 C; 298 G; 360 T; 0 other;
     ctctttacgt ttaggtgaga atgctaattg ctagcacgct cgctctagaa ccttgaataa        60
     acatggctgc tgcttatccg tggactttgt ttcttggcat gctggttatg gtatctggaa       120
     caatgggagc tgccctgagg aagccagtgg atgtggcgtt cggtaggaac tatgttccta       180
     catgggcttt tgaccacatt aagtacttca atggaggcaa tgagattcag ctgcacttgg       240
     ataaatacac aggtactggt ttccaatcaa aaggttcata cttatttggc catttcagta       300
     tgcaaatgaa gttggttcct ggtgactcag ctggaacagt cactgctttc tatctatcct       360
     cacaaaactc ggagcatgac gagatagact ttgagttctt aggaaacagg actggccagc       420
     cctacatttt gcagacaaat gttttcacag gaggcaaggg ggatagagaa cagaggattt       480
     acctctggtt tgacccaacc aaggaattcc actactattc tgtcctctgg aacatgtaca       540
     tgatagtgtt cctcgtggat gacgtgccaa tcagagtgtt caagaactgc aaagatttgg       600
     gagttaagtt tccattcaac cagccaatga agatctactc aagcctatgg aatgccgatg       660
     attgggctac caggggtgga ctcgagaaga cagactggtc caaggcaccg ttcattgcct       720
     cctacaggag cttccacata gatgggtgcg aggcctccgt ggaagccaag ttctgcgcca       780
     cacagggtgc tagatggtgg gaccagaagg agttccaaga tctggatgcc ttccagtaca       840
     ggaggctcag ctgggtccgc cagaaatata ccatctacaa ttactgcact gatagatcaa       900
     gatacccttc aatgccccca gaatgcaaga gagacagaga catataatga tatagtgtcg       960
     gagaccatat tggtgctgga tacattttat atgattggat taataatgat tgccgaagaa      1020
     gccctgttaa tctccatagc tgcttccatc ctgttttact cctgtaattg atataatata      1080
     cctgagagcg tgattatggt ttcatgaggg cgtgccactg ccatcatcgg gttattctct      1140
     ccgattcaac acaaattgtc acagttgagc gtctgttctg gtgtctatta tctttgttgt      1200
     gttgtcaaac tgtaatgaac cattatctta tgttgcgaat aaaattattt attatttgat      1260
     aaaaaaa                                                                1267
//
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