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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF428424; SV 1; linear; mRNA; STD; PLN; 1495 BP.
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AC   AF428424;
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DT   23-OCT-2001 (Rel. 69, Created)
DT   23-OCT-2001 (Rel. 69, Last updated, Version 1)
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DE   Arabidopsis thaliana At2g47760/F17A22.15 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1495
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-1495
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (05-OCT-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Cheuk,R., Chen,H.,
CC   Kim,C.J., Koesema,E., Meyers,M.C., Shinn,P., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1495
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-72-D11(R14893)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..42
FT   CDS             43..1359
FT                   /codon_start=1
FT                   /product="At2g47760/F17A22.15"
FT                   /note="Not56-like protein"
FT                   /db_xref="GOA:Q944H6"
FT                   /db_xref="InterPro:IPR007873"
FT                   /db_xref="UniProtKB/TrEMBL:Q944H6"
FT                   /protein_id="AAL16193.1"
FT                   /translation="MAGASSPASLRASRSRRLGKETNRSDLFKKPAVPFAFALILADAI
FT                   LVALIIAYVPYTKIDWDAYMSQVSGFLGGERDYGNLKGDTGPLVYPAGFLYVYSAVQNL
FT                   TGGEVYPAQILFGVLYIVNLGIVLIIYVKTDVVPWWALSLLCLSKRIHSIFVLRLFNDC
FT                   FAMTLLHASMALFLYRKWHLGMLVFSGAVSVKMNVLLYAPTLLLLLLKAMNIIGVVSAL
FT                   AGAALAQILVGLPFLITYPVSYIANAFDLGRVFIHFWSVNFKFVPERVFVSKEFAVCLL
FT                   IAHLFLLVAFANYKWCKHEGGIIGFMRSRHFFLTLPSSLSFSDVSASRIITKEHVVTAM
FT                   FVGNFIGIVFARSLHYQFYSWYFYSLPYLLWRTPFPTWLRLIMFLGIELCWNVYPSTPS
FT                   SSGLLLCLHLIILVGLWLAPSVDPYQLKEHPKSQIHKKA"
FT   3'UTR           1360..1495
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SQ   Sequence 1495 BP; 333 A; 326 C; 326 G; 510 T; 0 other;
     acgcggcgtt ggctagacgc tgatgcgatt tgctctgttt tcatggcggg cgcctcatca        60
     ccggcgagtt tgagagcttc tcgtagccgt cggctgggga aggagacgaa tcgatccgat       120
     ctattcaaaa aacctgcagt tccattcgca ttcgcgctaa ttcttgctga tgcaatccta       180
     gtcgcactta ttatcgccta tgttccatac acgaagatcg attgggatgc ttacatgtca       240
     caggttagtg ggtttctcgg gggagagaga gactatggga acttgaaagg cgatacaggg       300
     ccattggttt atccagcagg tttcctctat gtttactctg cagtgcagaa cttaactgga       360
     ggggaagtct accctgctca gattcttttt ggtgttctct acattgtcaa tctggggatc       420
     gtcttgatca tctacgtgaa gactgatgtg gtgccatggt gggcattaag tctactatgt       480
     ttatccaaga ggatacattc aatctttgtt ctccgtctct ttaatgattg ttttgccatg       540
     actctcctac atgcatcaat ggctctcttt ctctatcgta aatggcatct agggatgctt       600
     gttttcagtg gagctgtttc tgtaaagatg aatgtacttt tgtatgctcc aactttgtta       660
     cttctgctac ttaaggccat gaatatcatt ggagtggtgt ctgctttggc tggtgcagct       720
     cttgctcaga tactcgtggg actgccgttt ctgataacat atccggtttc atacatagca       780
     aacgcctttg atcttggacg tgttttcatt catttctggt ctgttaactt caaatttgtt       840
     ccagaacgag tttttgtgtc caaagaattt gcagtatgct tgctcattgc tcaccttttt       900
     ctccttgtgg cgttcgcaaa ttataagtgg tgcaagcatg aaggcgggat tataggcttc       960
     atgcgttcta ggcatttctt cttgacactt ccgtcttcac tctcgttcag tgatgtatca      1020
     gcctcacgga ttattacgaa agaacatgtc gtcacggcca tgtttgttgg gaatttcatc      1080
     ggcattgtat ttgctcgctc tctgcactac cagttctact catggtactt ctattcgcta      1140
     ccttatctac tatggagaac accgtttccc acttggctgc gcttgatcat gttcctcggc      1200
     attgagctct gttggaatgt ttatccatca acaccgtcct cctcgggttt gctattgtgt      1260
     ctacacttga tcattctggt gggtctctgg ttagctcctt cagtcgatcc ttatcagctc      1320
     aaagaacacc ctaaatccca aatacacaaa aaagcataac tgaacctttt gatgctcttt      1380
     tttttcttct tgtttccaag acttagagat aagctaaaga aagtaacggt taacttaact      1440
     atatgtgttt tgtaaacatg gtgatttata ataaaaaaat ttgtaatttg gcggc           1495
//
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