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EBI DbfetchID AF391102; SV 1; linear; genomic DNA; STD; PRO; 4260 BP. XX AC AF391102; XX DT 11-DEC-2001 (Rel. 70, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Bacteroides thetaiotaomicron putative glutamine synthetase (gs) gene, DE partial cds; putative regulator protein (malR) gene, complete cds; and DE putative beta-N-acetyl glucosaminidase (b-nagA) gene, partial cds. XX KW . XX OS Bacteroides thetaiotaomicron OC Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; OC Bacteroides. XX RN [1] RP 1-4260 RX DOI; 10.1128/JB.183.24.7198-7205.2001 RX PUBMED; 11717279. RA Cho K.H., Cho D., Wang G.R., Salyers A.A.; RT "New regulatory gene that contributes to control of Bacteroides RT thetaiotaomicron starch utilization genes"; RL J. Bacteriol. 183(24):7198-7205(2001). XX RN [2] RP 1-4260 RA Salyers A.A., Cho K.H.; RT ; RL Submitted (12-JUN-2001) to the EMBL/GenBank/DDBJ databases. RL Department of Microbiology, University of Illinois at Urbana Champaign, RL B103, CLSL, 601, S. Goodwin Avenue, Urbana, IL 61801, USA XX FH Key Location/Qualifiers FH FT source 1..4260 FT /organism="Bacteroides thetaiotaomicron" FT /mol_type="genomic DNA" FT /db_xref="taxon:818" FT CDS <1..1201 FT /codon_start=2 FT /transl_table=11 FT /gene="gs" FT /product="putative glutamine synthetase" FT /db_xref="UniProtKB/TrEMBL:Q8VS78" FT /protein_id="AAL39072.1" FT /translation="HIAGVNGFRQNIITGRSAPTPGINLFAPGKNPKGNMLFLTFLVNV FT LMMVYKNQDLLRASIMSASNSYRLGANEAPPAILSCFLGSQLSATLDEIVRQVGNEKMT FT PEEKTTLKLGIGRIPEILLDTTDRNRTSPFAFTGNRFEFRAAGSSSNCAAAMIAINAAM FT ANQLNEFRASVEKLMEEGVGKDEAIFRLLKETIIASEAIRFEGDGYSEEWRQEAARRGL FT TNICHVPEALMHYVDNQSKSVLIGERIFNETELNSRLEVELEKYTMKVQIEGRVLGDLA FT INHIVPTAVTYQNRLLENLCKMKEIFSPEEYEVLSADRKELIREISHRVTSIKVLVREM FT TEARKVANHKDNYKERAFEYEEKVRPYLDKIRDHIDHLEMEVDDEIWPLPKYRELLFTK FT " FT CDS 1319..2020 FT /codon_start=1 FT /transl_table=11 FT /gene="malR" FT /product="putative regulator protein" FT /note="controls expression of the second alpha-glucosidase" FT /db_xref="GOA:Q8VS77" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q8VS77" FT /protein_id="AAL39073.1" FT /translation="MVKMNMSDIDISEPLSDLLAPLNNEQREFLMNNYTIQTYKKNETI FT YCEGETPSHLMCLITGKVKIFKDGVGGRSQIIRMIKQREYFAYRAYFAKEDFVTAAAAF FT EPSVICLIPMTAITTLVAQNNDLAMFFIRQLSIDLGISDERTVSLTQKHIRGRLAESLI FT FLKESYGLEEDGSTLSIYLSREDLANLSNMTTSNAIRTLSQFATERLITIDGRKIKIIE FT EEKLKKISKIG" FT CDS 2073..>4260 FT /codon_start=1 FT /transl_table=11 FT /gene="b-nagA" FT /product="putative beta-N-acetyl glucosaminidase" FT /db_xref="GOA:Q8VS76" FT /db_xref="HSSP:1NOW" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q8VS76" FT /protein_id="AAL39074.1" FT /translation="MFVTSAFLFLYCWNLPIKQVHLSCQYINNLTQFQTMKKSISLLLL FT SLLMITPSCQKPKEVTNEYNIDPQPNQLVPKEGRFELSNKVRLVVPSDAPEVKKVADGF FT AEQLKQTAGISLTEAESVDGKPAISFVLHEGMPKEGYKLSVTPTLITVTASQPNGFFYG FT VQTIYQLLPPAVYGKELKKKADWSVPAVEIEDAPRFVHRGLMLDVCRHYAPIEYIYKFI FT DLLAMNKMNVFHWHLTDDQGWRIEIKKYPKLTEIGSKREKTLVDYYYVNYPQVFDGIEH FT GGYYTQEQIKEVVDYAASKYINVIPEIEMPGHALAALAAYPELSCDSTQTYKVSPTWGV FT FEQVFCPSETTFKFFEGVMDEVVELFPSEYIHIGGDECPKTAWKNSTFCQQLIRQLGLK FT DDATPSKVDGVKHSKEDKLQSYFVTRMEKYLNGKGRNIIGWDEILEGGLAPNATVLSWR FT GVEGGLNAAKAGHNAIMAPMPYAYLDFYQEDPEIAPTTIGGYTTLKKTYSYNPVPDNAD FT ELVKKHIIGMQGNLWREYMKTSDRVDYQAFPRAMAIAETGWTLDANKNWKSFCERMVTE FT FERLEVMDTKPCLNFFDVNINTHADENGPLMVLLETFYPNAEIRYTTDGSEPTYGSTLY FT EQPFVLEGNIDLKAAAFKDGKMLGKVTNKPLYGNLLAGKPFTVNYTMGWTGDIFGDNDV FT LGADKTTFGLTNGKRGNNASYTPWSSFAIVEGKDL" XX SQ Sequence 4260 BP; 1269 A; 1041 C; 978 G; 972 T; 0 other; ccatatagca ggcgttaacg ggttccggca aaacataata actggtcgct ctgcaccgac 60 accgggcatc aacctgtttg cccccggaaa gaacccgaaa ggcaatatgc tgttccttac 120 tttcctggta aacgtactga tgatggtata caagaaccag gacctgctgc gtgcctccat 180 catgagtgcc agcaacagct accgtctggg agcgaacgaa gctcctcccg ccatcctctc 240 ctgcttcctc ggttcacaac tctcggcaac cctcgacgaa atcgtacgcc aggtaggaaa 300 tgagaaaatg acaccggaag aaaagactac gctgaaactg ggaatcggac gtatcccgga 360 aatcctgctc gatactaccg accgcaaccg tacttctcct tttgccttca ccggaaaccg 420 ctttgagttc cgtgccgccg gctcttcttc caactgtgcc gccgccatga tcgccatcaa 480 cgccgccatg gccaaccagt tgaacgaatt ccgcgcatca gtggagaaac tgatggaaga 540 aggagtgggc aaagacgaag ctatcttccg cctgctgaaa gaaaccatca tcgcttccga 600 agccatccgc tttgaaggcg acggttactc cgaagaatgg agacaggaag ctgcccgccg 660 cggactgacc aacatctgcc acgtgccgga agcgctgatg cactacgtag acaaccagtc 720 gaaatcggta ctgatcggcg aacgcatctt caacgaaacc gaactgaaca gccgtctcga 780 agtagaactg gaaaaataca ccatgaaggt acagatcgag gggcgtgtat tgggcgacct 840 cgccatcaac cacatcgtgc cgacggctgt cacctaccag aaccggctgc tagagaatct 900 gtgcaaaatg aaagaaatct tctctccgga agaatacgaa gtattgagcg ctgaccgcaa 960 agaactgatt cgtgaaatct cgcaccgggt gacttccatc aaagtactgg tacgcgaaat 1020 gaccgaagcc cgaaaagtag ccaatcacaa agataactac aaagagaggg cattcgaata 1080 cgaagaaaaa gtgcgtcctt acctcgataa aatccgcgat catatcgacc atctggagat 1140 ggaggtagac gacgaaatat ggccgctgcc caagtatagg gaactcttgt tcaccaaata 1200 aaaaactcct gaagattgca cgaaagaacc tacttttgtg caatcttttt atagattcgt 1260 tcattttctc attttttctt tctacttttg tgctgtataa cacagttttg tagcacccat 1320 ggtaaaaatg aacatgtcag acatcgatat ttcggaacca ttatccgatt tgttagctcc 1380 tttgaataac gaacaaaggg agtttctgat gaacaattat acgatacaga cctacaaaaa 1440 gaacgaaacc atctactgcg aaggggagac tccctctcat ttgatgtgcc tcattaccgg 1500 caaagtcaaa atcttcaaag atggtgtagg aggtagaagt cagattatcc gcatgattaa 1560 acagcgggaa tactttgcgt accgtgcata cttcgcaaag gaagacttcg taactgccgc 1620 cgccgctttc gaaccttctg ttatctgtct catccccatg actgccatca ccacgctggt 1680 cgctcaaaac aacgatttag ccatgttttt tatccgccag ctttctatcg atctcggcat 1740 ttccgacgaa cgtaccgtca gcctgacaca gaaacatatc cgtggacgtc tggcagaatc 1800 gctgattttc ctcaaagaga gctatggact ggaagaagac ggatcgacat tgagtattta 1860 tctttcccgt gaagacctgg caaatctgtc gaacatgacc acctcgaacg ccatccgtac 1920 cttatcacag ttcgctacgg aacgtctgat caccattgac ggaagaaaga tcaagatcat 1980 cgaagaagaa aaactcaaga aaataagcaa gataggataa tacagacctt atacgatcat 2040 aaaaagtgat ctgaaacttt aactggaagc cgatgttcgt cacatcggct tttttatttc 2100 tatactgttg gaacttacca attaaacaag tacatttgtc ctgtcaatat attaataact 2160 taacacaatt tcagaccatg aagaaaagta tttcccttct tcttttatcc ttgctcatga 2220 ttacccccag ttgtcagaag ccaaaagaag tgacgaacga gtacaacatc gatccgcaac 2280 ccaaccagct tgttcccaaa gaaggccgct tcgaactgag caacaaggtc cggctggtag 2340 ttccgtctga tgctccggaa gttaaaaagg tagccgacgg ctttgccgaa cagctgaaac 2400 agactgccgg aatctctctg acagaggccg aaagcgtgga tggaaagcct gctatcagtt 2460 tcgtactaca cgaaggtatg cctaaagaag gttacaagct gtctgtcacc cccaccctta 2520 ttacagtcac agcttcccag ccaaatggat ttttctatgg tgtgcagact atttatcagc 2580 ttcttcctcc cgccgtatac ggaaaagagc tgaagaagaa agccgactgg tctgttccgg 2640 ctgtagagat cgaagacgct ccccgctttg tacatcgcgg actgatgttg gacgtttgcc 2700 gtcattacgc accgatagag tatatctaca aatttatcga cctgctggca atgaacaaga 2760 tgaacgtttt tcactggcat ctgacggacg atcagggatg gagaatcgaa atcaagaaat 2820 atccgaaact gacagagata ggttccaaac gcgaaaaaac gctggtagac tattattatg 2880 tgaactatcc gcaagtattc gacggaatag aacacggagg atattacaca caggaacaga 2940 taaaagaggt ggtagattat gctgcaagca aatatatcaa tgtaatcccc gaaatagaaa 3000 tgccggggca tgcattggcg gctctggctg cttaccccga attgtcttgt gattctacac 3060 agacatataa agtatcacct acgtggggcg tattcgaaca ggtattctgc ccgagcgaga 3120 ccactttcaa gttctttgaa ggagtcatgg acgaggtagt cgaattattt cccagcgagt 3180 acattcatat cggaggagac gaatgcccca aaacagcctg gaagaacagt actttctgcc 3240 agcagttgat tcgtcagtta ggcttgaaag atgacgcgac tcccagcaaa gtggacggag 3300 tgaagcacag caaggaagat aaactgcaaa gttacttcgt tacccgcatg gaaaaatacc 3360 tgaacggtaa aggacgcaat atcatcggct gggacgagat tttggaaggc ggcctggctc 3420 caaacgccac tgtcttgtca tggcgtggcg ttgaaggcgg attgaatgcg gccaaagcag 3480 gacacaacgc aatcatggct cccatgcctt atgcttatct ggacttctat caggaagatc 3540 cggaaatcgc cccgactacc atcggcggat acacaacgct gaagaagact tatagctaca 3600 atcctgttcc ggataatgcc gacgaactgg tgaagaaaca tatcatcggt atgcaaggca 3660 acctctggag agagtatatg aaaacttccg accgggtaga ttatcaggcc ttcccacgtg 3720 cgatggctat cgcggaaacg ggatggacac tggatgccaa caaaaactgg aagagtttct 3780 gcgaacgcat ggttacggaa tttgagcgcc tggaagtcat ggataccaaa ccctgcctca 3840 acttcttcga cgtaaacatc aatacgcatg cggatgaaaa cggtccgttg atggtattgc 3900 tggaaacatt ctacccgaat gcggaaatca gatacaccac agacggcagc gaaccgactt 3960 acggttctac actgtatgaa cagcctttcg tgcttgaagg aaacatcgac ttgaaagctg 4020 ctgctttcaa agacggcaag atgctgggca aagttaccaa caagccattg tatggcaatc 4080 tgctggcagg aaaaccattt accgtcaatt atacaatggg atggacaggg gatattttcg 4140 gcgacaatga tgtattggga gctgacaaaa caactttcgg tctgacaaat ggaaagagag 4200 gtaacaatgc ttcttacact ccgtggtcca gtttcgcaat cgtagaaggt aaagacctgg 4260 // |
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