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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF378879; SV 1; linear; mRNA; STD; PLN; 1047 BP.
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AC   AF378879;
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DT   31-MAY-2001 (Rel. 67, Created)
DT   31-MAY-2001 (Rel. 67, Last updated, Version 1)
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DE   Arabidopsis thaliana AT5g24420/K16H17_13 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1047
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J.,
RA   Bowser L., Carninci P., Chung M.K., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Palm C.J.,
RA   Pham P.K., Quach H.L., Sakano H., Sakurai T., Satou M., Seki M.,
RA   Southwick A., Tang C.C., Toriumi M., Yamada K., Yu G., Shinozaki K.,
RA   Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-1047
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J.,
RA   Bowser L., Carninci P., Chung M.K., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Palm C.J.,
RA   Pham P.K., Quach H.L., Sakano H., Sakurai T., Satou M., Seki M.,
RA   Southwick A., Tang C.C., Toriumi M., Yamada K., Yu G., Shinozaki K.,
RA   Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (09-MAY-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H.,
CC   Cheuk,R., Kim,C.J., Koesema,E., Meyers,M.C., Tracy,S.E., Banh,J.
CC   Bowser,L., Chung,M.K., Goldsmith,A.D., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Palm,C.J., Pham,P.K., Quach,H.L., Sakano,H., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yu,G., Davis,R.W., Theologis,A.,
CC   and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1047
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL04-09-D16(R12542)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             90..848
FT                   /codon_start=1
FT                   /product="AT5g24420/K16H17_13"
FT                   /note="6-phosphogluconolactonase-like protein"
FT                   /db_xref="GOA:Q8LEV7"
FT                   /db_xref="InterPro:IPR005900"
FT                   /db_xref="InterPro:IPR006148"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8LEV7"
FT                   /protein_id="AAK55682.1"
FT                   /translation="MAQRKMIVFPTKNELSEAMAEYTANLSAKFIKEKGLFTVVLSGGD
FT                   LIDWLCKLVQPPYIDSIEWPKWHVFWVDERVCAWEDPDSNYKLAMEGFLSKVPIPDKNI
FT                   YAIDKHLAADGNAEHCATLYEECLKNLVKEKIIPISKKTGYPEFDLQLLGMGPDGHMAS
FT                   LFPNHPQINEKQKWVTYITDSPKPPPKRITFTLPVINSTLYNLMAICDKAPAKSVAEIM
FT                   KHNNLSLPSAHLSAQVENVWYLDQAAASEL"
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SQ   Sequence 1047 BP; 289 A; 243 C; 220 G; 295 T; 0 other;
     gtagcaccac aacaacaata tccacattct tcttcttttg agtattacat ccaacgaaac        60
     gtctctttct ttctctctga taggcaacaa tggcgcagag gaagatgatt gtgtttccca       120
     ccaagaatga attgtccgaa gcaatggctg agtacactgc caatctctcc gccaagttca       180
     tcaaagagaa aggccttttc accgttgttc tctccggcgg tgacctaatc gattggctct       240
     gcaagttggt gcaacctcct tatattgatt caatcgaatg gccaaaatgg cacgtctttt       300
     gggtcgatga gagggtttgt gcatgggaag atccagacag taactacaaa ctcgccatgg       360
     agggttttct ctctaaggtt ccgattccgg ataagaacat ctacgcaatc gacaagcact       420
     tggcggctga tggtaacgcc gagcactgcg cgacgctcta cgaggagtgt ctaaagaatc       480
     tggtgaaaga aaagattatc ccaatatcga aaaagacagg gtatcctgag tttgatctac       540
     aacttctagg gatgggtcct gatggccaca tggcgtctct cttcccaaac catccacaga       600
     tcaatgagaa gcagaaatgg gtcacttaca tcaccgactc tccaaaacca ccaccaaaga       660
     gaatcacatt cactttaccg gtcatcaact ctactttgta caatcttatg gccatttgtg       720
     acaaagcacc ggccaaatcc gtggctgaga tcatgaagca caacaacctc tcgttacctt       780
     ctgctcatct tagtgctcaa gtcgaaaatg tttggtacct tgaccaagca gctgcctccg       840
     agctctagag aggtagccta aacacattaa tattggtgtt ttgtttgtag tctctacgtt       900
     gctttgtgtt gaataaccgg ttaatacatt tgcgtacgtt tacttcgtac aaaatgtgtt       960
     gaatattcga gctagttgtt tcttgtagtt gtgatgtgag tccctggcta tgactatata      1020
     tcattataaa aatatatagt gggcttc                                          1047
//
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