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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF368158; SV 1; linear; genomic DNA; STD; MAM; 1265 BP.
XX
AC   AF368158;
XX
DT   02-SEP-2002 (Rel. 72, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE   Callithrix pygmaea lysozyme gene, intron 3 and partial cds.
XX
KW   .
XX
OS   Callithrix pygmaea (pygmy marmoset)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae;
OC   Callitrichinae; Callithrix.
XX
RN   [1]
RP   1-1265
RX   DOI; 10.1016/S1055-7903(02)00312-3
RX   PUBMED; 12644406.
RA   Singer S.S., Schmitz J., Schwiegk C., Zischler H.;
RT   "Molecular cladistic markers in New World monkey phylogeny (Platyrrhini,
RT   Primates)";
RL   Mol. Phylogenet. Evol. 26(3):490-501(2003).
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RN   [2]
RP   1-1265
RA   Singer S.S., Schmitz J., Schwiegk C., Zischler H.;
RT   ;
RL   Submitted (05-APR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Primate Genetics, German Primate Center, Kellnerweg 4, Goettingen D-37077,
RL   Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..1265
FT                   /organism="Callithrix pygmaea"
FT                   /mol_type="genomic DNA"
FT                   /note="synonym: Cebuella pygmaea"
FT                   /db_xref="taxon:9493"
FT   intron          1..1157
FT                   /number=3
FT   repeat_region   280..295
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   repeat_region   296..883
FT                   /rpt_family="Alu"
FT                   /rpt_type=DISPERSED
FT   repeat_region   417..423
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   repeat_region   424..723
FT                   /rpt_family="Alu"
FT                   /rpt_type=DISPERSED
FT   repeat_region   724..731
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   repeat_region   884..899
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   mRNA            <1158..>1265
FT                   /product="lysozyme"
FT   exon            1158..>1265
FT                   /number=4
FT   CDS             <1158..1224
FT                   /codon_start=2
FT                   /product="lysozyme"
FT                   /db_xref="HSSP:133L"
FT                   /db_xref="InterPro:IPR001916"
FT                   /db_xref="UniProtKB/TrEMBL:Q8MJP0"
FT                   /protein_id="AAN01102.1"
FT                   /translation="VAWKAHCQNRDVSQYVQGCGV"
XX
SQ   Sequence 1265 BP; 379 A; 241 C; 276 G; 369 T; 0 other;
     gtatgtttca agtgttaaaa gggaaaacta ttttactcta ctgttgatat atacaatggg        60
     agcagatttt caaagaccga agtatgctaa tgacacctga aaattgcagc ttttggctta       120
     tgctaaataa catattactt acatccttga agaaacaatc tactttaact gatccagaat       180
     tttacttttt ttactcttca atttatttta ggagatttct agagttttaa gtttcttcac       240
     actctaccag ttccttgtca ttatcttgaa attcttttta gaataagtaa atgtgggcag       300
     agcatagttc acacctgtaa tcacagtact ttgggaggcc aaggcaagtg aatcacctga       360
     gtttgagacc aacctggcaa acatggcaaa accccatctc tactaaaaat acaaaaaatt       420
     agcggccggg cgcggtggct cacgcctgta atcccagcac tttgagaggc cgaggcgggt       480
     ggatcacgag gtcaagagat cgagactatc ttggtcaaca tgttgaaacc ctgtctctac       540
     taaaagtaca aaaaattagc tgggcacggt ggcgcgtgcc tgtaatccca gctactcagg       600
     aggctgaggc aggagaattg cctgaaccca ggaggcggag gttgcggtga gccacgatcg       660
     cgccattgca ctccagcctg ggtaacaaga gcgaaactct gtctcaaaaa aaaaaaaaaa       720
     aaaaattagc tgggtatcgt ggtaggtgtc tgtaattcca gctactcggg aggctgagag       780
     ggagaattgc ttgaacctga gaggggaagg ttgcagagat tgtgccattg cactccagcc       840
     tgggcaacag agtgagactc tgcctccaaa aaaaaaaaaa gagagaataa gtaaatgtgg       900
     aatttacttt gcagttgctg ctgtacaatg cacattactc actctttatg ttcagcattc       960
     tatactctac tgggagattt agggaggagt gaaatacttt gtgcacatag cttcatttaa      1020
     taaatagcaa tagctgggtc tatcttagca ttttatctat tggcaaaata ttttgtttcc      1080
     ccaagatgta tgaagtatat atattacagt gaagatatgt gttaaccttt caccatttgc      1140
     tttatctttt tctacagggt ggcatggaaa gctcattgtc aaaacagaga tgtcagtcag      1200
     tatgttcaag gttgtggagt ataactgcag aattttcctt cttcagctca tttttgtctc      1260
     tttct                                                                  1265
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