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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF368157; SV 1; linear; genomic DNA; STD; MAM; 1279 BP.
XX
AC   AF368157;
XX
DT   02-SEP-2002 (Rel. 72, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE   Callithrix jacchus lysozyme gene, intron 3 and partial cds.
XX
KW   .
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OS   Callithrix jacchus (white-tufted-ear marmoset)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae;
OC   Callitrichinae; Callithrix.
XX
RN   [1]
RP   1-1279
RX   DOI; 10.1016/S1055-7903(02)00312-3
RX   PUBMED; 12644406.
RA   Singer S.S., Schmitz J., Schwiegk C., Zischler H.;
RT   "Molecular cladistic markers in New World monkey phylogeny (Platyrrhini,
RT   Primates)";
RL   Mol. Phylogenet. Evol. 26(3):490-501(2003).
XX
RN   [2]
RP   1-1279
RA   Singer S.S., Schmitz J., Schwiegk C., Zischler H.;
RT   ;
RL   Submitted (05-APR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Primate Genetics, German Primate Center, Kellnerweg 4, Goettingen D-37077,
RL   Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1279
FT                   /organism="Callithrix jacchus"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9483"
FT   intron          1..1171
FT                   /number=3
FT   repeat_region   280..295
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   repeat_region   296..897
FT                   /rpt_family="Alu"
FT                   /rpt_type=DISPERSED
FT   repeat_region   417..423
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   repeat_region   424..735
FT                   /rpt_family="Alu"
FT                   /rpt_type=DISPERSED
FT   repeat_region   736..743
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   repeat_region   898..913
FT                   /rpt_type=DIRECT
FT                   /note="Alu insertion target sequence"
FT   mRNA            <1172..>1279
FT                   /product="lysozyme"
FT   exon            1172..>1279
FT                   /number=4
FT   CDS             <1172..1238
FT                   /codon_start=2
FT                   /product="lysozyme"
FT                   /db_xref="HSSP:133L"
FT                   /db_xref="InterPro:IPR001916"
FT                   /db_xref="UniProtKB/TrEMBL:Q8MJP1"
FT                   /protein_id="AAN01101.1"
FT                   /translation="VAWKAHCQNRDVSQYVQGCGV"
XX
SQ   Sequence 1279 BP; 390 A; 242 C; 278 G; 369 T; 0 other;
     gtatgtttca agtgttaaaa gggaaaacta ttttactcta ctgttgatat atacaatggg        60
     agcagatttt caaagaccga agtatgctaa tgacacctga aaattgcagc ttttggctta       120
     tgctaagtaa catattactt acatccttga agaaacaatc tactttaact gatccagaat       180
     tttacttttt ttactcttca atttatttta ggagatttct agagttttaa gtttcttctc       240
     actctaccag ttccttgtca ttatcttgaa attcttttta gaataagtaa atgtgggcag       300
     agcatagttc acacctgtaa tcacagtact ttgggaggcc aaggcaagtg aatcacctga       360
     gtttgagacc aacctggcaa acatggcaaa accccatctc tactaaaaat acaaaaaatt       420
     agtggccggg cgcggtggct cacgcctgta atcccagcac tttgagaggc cgaggcgggt       480
     ggatcacgag gtcacgagat cgagactatc ttggtcaaca tgttgaaacc ctgtctctac       540
     taaaagtaca aaaaattagc tgggcacggt ggcgcgtgcc tgtaatccca gccactcagg       600
     aggctgaggc aggagagttg cctgaaccca ggaggcggag gttgcggtga gccacgatcg       660
     caccattgca ctccagcctg ggtaacaaga gcaaaactct gtctcaaaaa aaaaaaaaaa       720
     aaaaaaaaaa aaaaaaatta gctgggtatg gtggtaggtg tctgtaattc cagctactcg       780
     ggaggctgag agggagaatt gcttgaacct gagaggggaa ggttgcagag attgtgccat       840
     tgcactccag cctgggcaac agagtgagac tctgcctcca aaaaaaaaaa aaaaaagaga       900
     ataagtaaat gtggaattta ctttgcagtt gctgctgtac aatgcacatt actcactctt       960
     tatgttcagc attctatact ctactgggag atttagggag gagtgaaata ctttgtgcac      1020
     atagcttcat ttaataaata gcaatagctg ggtctatctt agcattttat ctattggcaa      1080
     aatattttgt ttccccaagg tgtatgaagt atatatatta cagtgaagat gtgtgttaac      1140
     ctttcaccat ttgcttcatc tttttctaca gggtggcatg gaaagctcat tgtcaaaaca      1200
     gagatgtcag tcagtatgtt caaggttgtg gagtataact gcagaatttt ccttcttcag      1260
     ctcatttttg tctctttct                                                   1279
//
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